Sorghum bicolor (sorghum): 8056889
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Entry
8056889 CDS
T01086
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03030
DNA replication
sbi03420
Nucleotide excision repair
sbi03430
Mismatch repair
sbi03440
Homologous recombination
sbi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
8056889
03420 Nucleotide excision repair
8056889
03430 Mismatch repair
8056889
03440 Homologous recombination
8056889
03460 Fanconi anemia pathway
8056889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sbi03000
]
8056889
03032 DNA replication proteins [BR:
sbi03032
]
8056889
03400 DNA repair and recombination proteins [BR:
sbi03400
]
8056889
Transcription factors [BR:
sbi03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
8056889
DNA replication proteins [BR:
sbi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
8056889
DNA repair and recombination proteins [BR:
sbi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
8056889
MMR (mismatch excision repair)
8056889
DSBR (double strand breaks repair)
HR (homologous recombination)
8056889
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
8056889
NCBI-ProteinID:
XP_002468278
UniProt:
C5WST0
LinkDB
All DBs
Position
1:complement(73275150..73278963)
Genome browser
AA seq
623 aa
AA seq
DB search
MDAANSVTPGAVSHILAHPSTGSDGAVPDLVVQVLDLKSIGTGSRFSFMATDGKDKIKAM
FPTSFASEVRSGNLKNLGLIRILDYTCNAVNGNNGKVLIVIKCELVCQALDAEINGEAKK
EEPPIVLKPKDEGVVVAEQANAPPVAIKPKQELKSASQIVNEQRGNAAPAARLSMTRRVH
PLITLNPYQGNWVIKVRVTSKGNLRTYRNARGEGCVFNVELTDEDGTQIQATMFNEAAKK
FYPIFELGKVYYVSKGSLRIANKQFKTVQNDYEMSLNENAIVEEAEGETFIPQVQYNFVK
IDHLGTYVGGRELVDIIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVSISLWND
LATTTGQELLDMVDSSPVVAIKSLKVSDFQGVSLSTIGRSTLAINPDLPEAQNVKSWYDS
EGKDTSLAPIGAEMGAARAGGLKSMYSDRVFLSHITSDPAMGQEKPVFFSLNAIISHIKP
DQNMWYRACKTCNKKVTEAFGSGYWCEGCQKNDSECSLRYIMVLKISDPTGEAWVSVFNE
HAEKIIGCSADELDRIRKEEGDDSYILKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRS
EAPVDYAAESKYLLEEIAKLTAC
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggacgctgccaactcggtaacgccgggcgccgtgtcgcacatcctggcgcacccgtcg
acgggctccgacggcgccgtgccggatctcgtcgtccaggtcctcgacctcaagtccatc
ggcacgggcagccggttcagtttcatggcaaccgacgggaaggataagatcaaggcgatg
ttccccaccagcttcgcgtcggaggtccgctccggcaatctgaagaacctcggcctcatc
cgcatcctcgactacacttgcaacgccgtcaacggcaacaatggcaaagtcttgattgtc
atcaaatgcgagcttgtgtgccaagcgctcgacgccgagatcaacggcgaggccaagaaa
gaggagcctccaattgtgctgaagcctaaggacgaaggcgtggtcgtggctgagcaggca
aatgctcccccagtcgcgattaagcccaagcaggagttgaagtccgcgtcccagatcgtg
aacgagcagcgtggaaatgctgctcctgctgcgcgcctttccatgacaaggagggtccat
cctttgatcactctgaacccctaccagggtaactgggtcattaaggtgcgggtcacgagc
aaaggcaacctgagaacctacaggaatgctcgtggagaaggctgtgtcttcaatgtagag
ctcactgatgaggatggcacccagatccaggccaccatgttcaatgaggctgcaaagaag
ttctatccaatttttgagctgggaaaggtctattatgtctcaaaaggatctcttagaatt
gccaacaagcagttcaagactgttcaaaatgactatgagatgtcactaaacgagaatgct
attgttgaagaagcagagggggaaactttcattccgcaagtgcaatacaactttgtcaag
attgatcatctaggaacatatgttggtggcagggaacttgttgatattatcggtgtggtt
cagagtgtatctcccacactcagcgttaggagaaagattgacaatgagacaataccaaag
cgtgacattgttgtagcagatgactctggcaaaactgttagtatttctctctggaatgat
cttgctactactactggccaagagcttttggacatggttgacagttctcctgttgttgcg
ataaagagcctaaaagtatctgatttccaaggcgtgtcactttcaactataggcagaagc
actcttgctattaatccagacctgcctgaggctcagaatgttaaatcatggtatgactct
gaaggcaaagatacttcactagcaccaattggtgcagaaatgggtgctgcacgggctggt
ggcctgaagtccatgtattctgatagagtttttctgtctcacatcaccagtgatcctgct
atgggccaggaaaagcctgttttcttcagtttaaatgccatcataagccacatcaagcct
gaccagaatatgtggtaccgtgcttgcaagacctgcaacaagaaggtgactgaagctttt
ggatctggatactggtgtgagggatgccaaaagaacgactctgaatgctcactgagatac
ataatggtcctcaagatctctgatcccactggtgaggcatgggtgtccgtgttcaacgag
catgctgagaagatcattggctgcagcgctgacgagcttgatcggatcaggaaagaggag
ggcgatgacagttacattctcaagctcaaggaagccacctgggttcctcaccttttccgc
gtcagcgtcacgcagcatgaatacatgaacgagaaaaggcagaggatcaccgtgaggagt
gaagcaccggtcgactatgcagctgaatccaagtacctgcttgaagagatcgcgaagctt
actgcttgctag
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