Sorghum bicolor (sorghum): 8056894
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Entry
8056894 CDS
T01086
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
sbi
Sorghum bicolor (sorghum)
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbi03400
]
8056894
Enzymes [BR:
sbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
8056894
DNA repair and recombination proteins [BR:
sbi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
8056894
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_22
AAA_19
DEXQc_Suv3
T2SSE
AAA_30
PhoH
Motif
Other DBs
NCBI-GeneID:
8056894
NCBI-ProteinID:
XP_002465650
LinkDB
All DBs
Position
1:73397487..73421199
Genome browser
AA seq
2084 aa
AA seq
DB search
MLAPLPRLTSALRGRYDADQAYLLRKSALQALTLPRPHDEWKLARKIVPGWDDASSEVRQ
AYKQFIGAVVELLSGEAVSEELYEVAQTVYTLFGGDDTEYVAAERALSKRNELESLVGYT
VQDSVLKKLSQLSQKLGSLQRASAHESVHRIADDVNENDRTEFGADFDFKPPARFIVDVS
LDVPLESAELGSGPFEKGQYDAWSASTTSHSTAVRGSVSLRWLKDQCALITKSGGSMLSG
DELAMTLCRVLLSNKAGDEIAGELLDLVGDTAFEIVQDLLLHRKELVDAIQHGLSILKSE
KMTSGNQPKMPTYGTQVTVQTESERQLDKIRRKEEKRSKRGADSGNSDIGVDDFSSLLLA
SERKKPFDDVIGTGEGSDSFTVTSLPQGTTRKHMKGYEEVKIPPTPTASLKPNEKLIEIR
ELDEFAQAAFQGYKSLNRVQSRIFQATYYTNENILVCAPTGAGKTNIAMIAVLHEVKQHF
RDGILHKNEFKIVYVAPMKALAAEVTATFSRRLSPLNLVVRELTGDMQLTKNEIEETQMI
VTTPEKWDVITRKSSDMSLSMLVKLIIIDEVHLLNDDRGSVIEALVARTLRQVESMQSMI
RIVGLSATLPTYLEVAQFLRVNPDTGLFFFDSSYRPVPLAQQYIGISERDYTKRSELFNT
LCYEKVVESIKQGHQALVFVHTRKDTGKTARTLIDLAAKAGELELFSSADHPQFPLIKKD
VSKAKSREVVEFFESGFGIHNAGMMRSDRSLMERLFGDGLLKVLVCTATLAWGVNLPAHT
VVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITTHDKLAYYLRLLTS
QLPIESQFLGSLKDNLNAEVALGTVTNVREACTWLGYTYLFIRMKTNPLVYGITWEEVMG
DPSMGAKQRTFIIDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYLQYSSVETYNEML
RRHMSESELITMVAHSSEFENIVVREEEQDELETLARKACPLEIKGGPTDKHGKISILIQ
VYISRAPIDSSSLHSDAQYISQSLARIMRALFEICLRRGWSEMSSLLLQYCKAVDRKIWP
HLHPLRQFDKDLSPQILWKLEERNVDLDHLYEMEENEIGALIRFSHQGKLVKQYAGYFPY
VNLSATVSPITRTVLKVDLHITPEFVWKDRYHGMSERWWIIVEDSENDTIYHSELFTLTK
KMARGTPTKISFNVPIFEPHPPQYYIRAISDSWLHAETLFTVSFHNLTLPQTQITHTELL
DLKPLPLSALGNKTYEDLYRFSHFNPIQTQAFHVLYHTDNNVLLGAPTGSGKTISAELAM
LHLFNTQPDMKVVYIAPLKAIVRERMNDWRKRLVTQLGKKMVEMTGDFTPDLMALLSADI
IISTPEKWDGISRNWHSRSYVMKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTERS
IRFVGLSTALANARDLADWLGVTDDGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNK
PAYAAICTHSPNKPVLIFVSSRRQTRLTALDIIQLAASDEKPRQFLSIADNSLDMVLSQV
SDSNLRHTLQFGIGLHHAGLNDRDRTLVEELFSNNKIQVLVCTSTLAWGVNLPAHLVIIK
GTEYYDGKTKRYIDYDITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPV
ESNLREHLHDHINAEIVSGTISNKEEAIIYLTWTYLYRRLVVNPAYYGLEDTETNTLNSY
LSRLVETTFEDLEDSGCIKVDDHSVKYLILGKIASQYYLSYLTVSMFGSNIGPNTSLEVF
VHILSAAAEFDELPVRHNEDNLNRILSGNVPYPVDQHHLDDPHVKANLLFQAHFSRAELP
ISDYVTDLKSVLDQSIRIIQAMIDVCANSGWLSSALTCMHLLQMIIQGLWFERDYESLWM
LPSMNGDILDHLKGRGVSTVPSLLVLSREELHKLLQPFSASELYQDLQHFPRVDVKVKLR
NEQERSKPPTLNIRLQLKNSRRSASRAFAPRFPKAKQEAWWLVLGNATSSELYGLKRISF
ADRVVNTRMELPQMFDAQETKLILVSDCYLGFDLEYYLEHLTKG
NT seq
6255 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcgccgcttccgcgcctgacgagcgcgctccgcggccgctacgacgccgatcag
gcctacctcctccgcaagagcgccctccaggcgctcaccctccccaggccgcatgacgag
tggaagctcgcgcggaaaatcgtgcctggttgggacgatgcttccagcgaagtgcgccag
gcgtataaacaatttatcggggctgttgtggagttgttgagcggagaggcagtgtctgaa
gaactctatgaagttgctcagactgtgtataccctatttggtggcgatgacacggagtat
gttgctgccgaaagagccctttccaaaaggaatgagttggagagccttgtgggctacact
gtacaagactcagttttgaaaaagctatctcagttatctcagaagctcggttcccttcaa
cgagcaagtgcccatgagtctgtacacagaatagcggatgatgtaaatgaaaatgataga
actgaatttggagcagacttcgatttcaagccgcctgcccgtttcattgttgatgtttct
cttgacgtaccgttggaaagtgctgaattgggcagtggtccatttgaaaaagggcagtat
gatgcttggagcgcatccacaactagtcattcaactgctgttaggggttctgtgagtttg
aggtggctgaaagatcagtgtgctttgataactaaaagtggtggctcgatgctctcagga
gatgaacttgctatgaccttgtgcagagtactcctatcaaataaagcaggagatgagata
gctggtgaactgttggacctggttggcgacactgcttttgaaatagttcaggatcttctt
ttgcataggaaagagctagtagatgcaattcaacatggattatcaatactgaaatctgag
aaaatgacttcaggtaatcaaccaaagatgccaacttatggcacacaggtaactgtacaa
acagagtctgaacgccagcttgataagattaggaggaaagaggaaaaacgtagcaagcgt
ggtgcagacagtggcaatagcgatattggtgtcgatgatttttcatcccttcttttggca
agtgaacgaaagaagccatttgatgacgtgattggtactggagaagggtcggatagtttt
acagtaacttcccttcctcaaggaaccacaaggaaacatatgaaggggtatgaagaagtg
aagattccaccaactccaacagcatcactgaaacccaatgagaagctgattgaaataaga
gaattagatgagttcgctcaagctgctttccagggatacaagtcactcaatcgtgtgcag
agtcgtattttccaagctacatactacaccaatgagaatattttagtttgtgccccaaca
ggtgctgggaaaacaaatattgcaatgattgcagttcttcatgaggttaaacagcacttc
agggatggcattttacataaaaatgagtttaagatagtctatgttgctccaatgaaggcc
ttggctgcagaggtaacagcaacattcagtcgccgattatctccattgaacctggttgtt
agagaacttacaggagatatgcagttgaccaaaaatgagattgaagaaactcagatgata
gtgactactcctgagaagtgggatgttattacacgtaaaagcagtgacatgtcactttca
atgctggttaagctgataatcattgatgaagtacaccttttaaatgatgatagaggttca
gtaattgaggcgctagtagctcggactctccgccaggttgagtctatgcaatcaatgatt
cgcattgttggcctatctgctaccctgcctacctacttagaggttgcacaatttttgcgg
gttaatccagacactggccttttcttttttgactcaagctatcgtccagttcctcttgct
cagcagtacattgggatcagtgaaagggattacacaaagagaagtgaactattcaatact
ttgtgttatgagaaggttgttgagtccattaagcaaggtcaccaagcattggtttttgtt
catacccgcaaggatactgggaaaactgctagaaccctgattgacctagcagcaaaagca
ggtgaattggaattattttcaagtgcagatcatcctcaatttccattaatcaagaaagat
gttagtaaagcaaaaagtcgtgaagttgttgaattttttgaatctggatttggtatacac
aatgctggaatgatgcgttctgacagaagtttgatggagcgcttgtttggtgacgggctt
ttgaaagtccttgtttgtacagcaactttggcttggggagtaaacttaccagctcataca
gttgttataaagggcacacagctatatgatcctaaagctggtggatggcgagatctgggg
atgcttgatgtgatgcagatctttggacgtgctggaaggccacagtttgataaaagtggc
gaaggaattattatcacaacacatgacaaattggcttattacttgaggctattgacaagt
cagcttccaatagagagccagttccttggatctctgaaagataatttaaatgctgaggtt
gccttgggcactgtaacaaatgtcagggaggcttgtacctggcttggttatacatactta
tttataaggatgaagactaatcctctggtgtatgggataacttgggaagaggttatggga
gatccttctatgggtgcgaagcaaagaacatttattattgatgctgcacgtgcactggac
aaagctaagatgatgcgctttgatgaaaagagtggtaacttctactgcactgaacttggt
cgaattgcaagccacttttaccttcagtactccagtgttgagacttacaatgagatgctt
cggcgtcacatgagtgaaagtgagctgattactatggtggcccattcctctgaatttgag
aatatcgtagtaagagaagaagaacaagatgaattagaaacccttgccaggaaagcatgc
cctttggaaattaagggtgggccgactgacaaacatgggaaaatttcaattctcatacag
gtttatatttcccgtgctccaatcgatagttcctctttacattctgatgctcaatacatt
agtcaaagtttggcacgtattatgagggcactatttgagatttgtctgcgtcggggatgg
tctgagatgtcatccttattattacaatattgcaaggccgtggaccgcaagatatggccc
catctccatccacttaggcagtttgataaggatctttctcctcagatattgtggaaactc
gaggaaagaaatgttgatctggatcatctttatgagatggaggaaaatgaaattggagct
ttgatccggttttctcatcagggaaagttggttaagcaatacgctggatacttcccatat
gtcaacctttctgcaaccgtgagcccaatcactaggacagttcttaaagtggacctgcat
ataactcctgaatttgtgtggaaagatcgttatcatggcatgtcagaacgatggtggatc
attgttgaggattctgaaaatgataccatttatcattcagagctattcacattaacaaag
aagatggcaagaggaacacctacaaagatatcttttaatgtaccaatatttgaacctcat
ccaccacagtactatatacgtgccatctcagactcatggttacatgctgagacactcttc
accgtttcttttcataatctgacattgccacagacacaaataacacacactgagcttttg
gacttgaagcctcttccactgagtgctcttggcaacaaaacgtacgaggatctgtacaga
ttttcccatttcaatccaatacaaactcaggcttttcatgttctttatcacactgataac
aatgtactcttgggagctccaactggaagtggcaaaacaatttcagcagaacttgcaatg
ctccatcttttcaatacacaaccagacatgaaggtagtttacattgctcctctaaaggct
atagtacgagaaagaatgaatgattggagaaaacgccttgtaactcagcttgggaagaag
atggttgagatgactggtgacttcactccagatttgatggccctattatcagctgacatc
atcatttctacccctgaaaaatgggatgggatcagtcgaaattggcatagcagaagttac
gttatgaaggttgggctcatgatattggatgagatacatcttctgggagctgaccgtgga
cccatccttgaggtcattgtatcaagaatgcgatacatatcatcacaaacagaacgctca
attcggtttgttggtttatcaacggcattagcaaatgctcgtgatttagcagattggttg
ggcgttacagatgatggtctattcaatttcaagcctagtgtgaggcctgtacctcttgaa
gtgcatatccagggatatcctgggaaattctattgtccaagaatgaatagcatgaacaaa
ccagcttatgcagccatatgcactcattcacccaataaacccgttctcatttttgtgtca
tcacgtcgacagacaagacttacagctcttgatattattcagcttgcagcatcagatgaa
aaaccaaggcagttcctgagcatcgcggacaactctctagacatggttctttcacaagtt
tctgacagtaatttgaggcatactctgcaatttggcataggtctgcatcatgcaggttta
aatgacagagacagaaccttggttgaggagcttttttcaaacaataagattcaggtgctg
gtatgtaccagcacattggcgtggggtgtcaatcttccagctcacctggtcataatcaag
ggaactgaatactatgatgggaaaacaaaaagatacatagattatgatatcacagatatt
ctgcaaatgatgggtcgtgcaggtcggccgcaatatgaccagcatggcaaagctgttatt
cttgttcatgaaccaaaaaagagcttttacaagaagttcctctacgaaccatttcctgtg
gaaagtaatctgagggagcacttgcatgaccacataaatgcagaaattgtttctggcacc
atcagcaacaaggaggaggcgattatttatctcacctggacttacctatatcgcagattg
gttgttaatccggcctattatggattggaggatactgaaacaaacacattgaattcttat
ctatcaaggttagtcgaaactacatttgaagatcttgaggacagtggatgcataaaagtg
gatgaccactctgtaaagtacttgattttggggaaaatagcttcacagtattacctcagc
tacctcactgtttcaatgtttgggtcaaatattggccccaacacatcattggaagtcttt
gtgcacatactgtcggctgcagcagaatttgatgagcttcctgtgcggcataatgaggat
aatttgaatcgaatactcagtggaaatgtcccgtatccagttgatcaacaccaccttgat
gatccacatgttaaagccaacttactctttcaggcacatttctccagagcagaattgcca
ataagtgactatgtcactgacttgaaatcagttcttgatcagagcatacgtatcatacag
gcgatgattgatgtatgcgccaatagtggatggctttcgagtgcattgacttgcatgcat
ctcttgcagatgatcatacagggtctctggtttgagagggattatgaatccctctggatg
ttgccatccatgaatggtgatatattagatcatctcaagggtagaggagtctcaacagtc
ccctccttgctggttctttcccgtgaagaattgcataagctacttcaaccattttctgcg
tcagagttgtatcaggatctgcaacatttccctcgtgttgatgtgaaagttaagcttcgt
aatgaacaggagcgatccaaacctccaactttaaacatcagattgcaattgaaaaattca
cgacgttcagcatcaagagcatttgcccctagatttcccaaggcaaaacaagaagcttgg
tggctagtcctagggaatgctacaagttcagagctgtatggtctgaaaagaattagtttt
gcagatcgggtggttaatactcgcatggaattgccacagatgttcgatgcacaggagacg
aagctgattttggtgtcggattgctacctaggttttgacttggagtattatcttgagcat
ctcaccaagggttga
DBGET
integrated database retrieval system
