Sorghum bicolor (sorghum): 8057105
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Entry
8057105 CDS
T01086
Name
(RefSeq) polygalacturonase ADPG2
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi00040
Pentose and glucuronate interconversions
sbi01100
Metabolic pathways
Module
sbi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
8057105
Enzymes [BR:
sbi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
8057105
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
End_N_terminal
NosD
Motif
Other DBs
NCBI-GeneID:
8057105
NCBI-ProteinID:
XP_002466242
UniProt:
C5WW44
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Position
1:complement(3388587..3390634)
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AA seq
452 aa
AA seq
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MASPSRTNKPQLVLWPSLLTLLIFLPGALEASAAGAGTGTSTFSPSSISSSADGAAAAAT
GRRSLLAASPSSSVFSLDRYGACGDGSHDDTQALARAWNAACASPQPAVLLVPGGKRYLL
KLVTLSGPCKSSVTVTVKGTLVASPNRSDWSDEDRRHWIVFRQVDRLTVNGAGTVDGNGE
TWWKNSCKINKALPCKEAPTALSFHFCTSLRVQDLNVVNSQQIHMSIEDCTGVQLTGLSI
TAPGTSPNTDGIHITRSNDVQVTNCKIKTGDDCLSIESGTHNLHVSQVVCGPGHGISIGS
LGDDNSRAEVSGITIDSVQLYGTTNGARIKTYQGGSGYAKDITFQNMVMYDVANPIIIDQ
NYCDKATAPCELQGSAVEVSNVVFKNIKGTTVTKDAIMLNCSRNVPCLGITLQNINLRMQ
GSNGKDAAESTCQNARWRKSGTVLPQPCTSKN
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgccgtcccgaacaaacaagccgcagcttgtgttgtggccgtcactcctcacg
ctgctgatcttcttgcccggcgccctagaggcttctgctgcgggtgccggaacaggcacc
agcaccttctccccgagctccatcagctcctctgccgatggtgcagcagcagctgctacg
ggccgcaggtcgctgctggcggcgtcgccgtcgtcgagcgtgttcagcctcgaccgctac
ggcgcctgcggcgacgggagccacgacgacacccaggcgctggcccgggcgtggaacgcg
gcgtgcgcttcgccgcagccggccgtcctgctcgtccccggcggcaagcgctacctgctc
aagctcgtcactctttccggcccgtgcaagtccagcgtcacggtgacagtgaagggcacg
ctggtggcgtcgccgaaccggtccgactggagcgacgaggaccggcggcactggatcgtg
ttccgtcaggttgacaggctcaccgtcaatggcgccggcaccgtcgacggcaacggcgag
acgtggtggaagaactcgtgcaagatcaacaaggctctcccgtgcaaggaggccccaacg
gcgctgtcgttccatttctgcacgagcttgagagtgcaggatctgaatgttgtcaacagc
cagcagatccacatgtccattgaggattgcaccggcgtgcagctgacaggcctgtcgatc
acggcgcccggcaccagtcccaacactgacggcatccacatcacacgcagcaacgatgtg
caggtcaccaactgcaagatcaagacaggtgacgattgcctgtccatcgagagtgggacg
cacaacctccatgtgtcgcaagtggtatgtgggccagggcatgggatcagcatcgggagc
ttaggagacgacaactcgagagccgaagtctcaggcatcaccatagattcagtacaatta
tacggcacgaccaacggagcacgcatcaagacgtaccagggaggaagtgggtacgccaag
gacatcacgttccaaaacatggtcatgtacgacgtcgcgaacccgatcatcatcgaccag
aactactgcgacaaggctacggcgccatgcgaattgcagggatcggcagtggaggtcagc
aatgtcgtgttcaagaacatcaaggggacgacagtgaccaaggacgctatcatgctgaat
tgcagcaggaacgtcccgtgccttggcattaccctgcagaacattaacctgaggatgcag
ggcagtaacggtaaggatgccgcggaaagcacatgccagaatgcgagatggagaaaatcc
gggacggttcttccacagccgtgcacctccaaaaactag
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