Sorghum bicolor (sorghum): 8057539
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Entry
8057539 CDS
T01086
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8057539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbi03021
]
8057539
03041 Spliceosome [BR:
sbi03041
]
8057539
03036 Chromosome and associated proteins [BR:
sbi03036
]
8057539
Transcription machinery [BR:
sbi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
8057539
Spliceosome [BR:
sbi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
8057539
Complex B
8057539
Complex C
U2 SnRNP specific factors
8057539
Chromosome and associated proteins [BR:
sbi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
8057539
TFTC complex
8057539
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
8057539
NCBI-ProteinID:
XP_002451507
UniProt:
C5XTZ1
A0A921UJ24
LinkDB
All DBs
Position
4:2792058..2797344
Genome browser
AA seq
1232 aa
AA seq
DB search
MYLYSLTLQRATGAVCAVIGSFSGRDSKKSAASGSGSGSTQEIAVARGSTLDLLRPDPET
GRLRTLLSVDVFGAIRSLAQFRLTGANKDYLVVGSDSGRLVILEYSPDRNRLDKVHQETF
GKSGCRRIVPGQLLAVDPKGRALCIAALEKQKLVYVLNRDAAARLTISSPLEAHKSNTLT
FALAALDCGFDNPVFAAIELEYAESDRDPTGQAANQAQKLLTFYELDLGLNHVSRKVSEP
IDNGANLLVTVPGGGDGPSGVLVCCDNFVLYRNQGHPEIRAVIPRRADLPAERGVLIVAA
ATHKQKSMFFFLLQTEYGDIFKVDLDHNGDTVSELRIKYFDTIPVTSAVCVLRSGFLFAA
SEFGNHALYQFRDIGRDADVESSSATLMETEEGFQPVFFQPRALKNLMRIDEIESLMPVM
DMRVANLFDEETPQLFTACGRGPRSTLRILRPGLAISEMARSMLPAEPIAVWTVKKNIND
MFDAYIVVSFTNVTLVLSIGETIEEVSDSQFLDTTHSLAVTLLGEDSLMQVHPNGIRHIR
EDGRVNEWRTPGKKTITKVGSNRLQVVIALSGGELIYFEMDMTGQLMEVEKQDMSGDVAC
LAIAPVPEGRQRSRFLAVGSYDNTIRILSLDPDDCLQPLSVQSVSSAPESLLFLEVQASI
GGEDGADYPANLFLNAGLQNGVLFRTNVDMVTGQLSDTRSRFLGLRPPKLFPCVVSHRQA
MLCLSSRPWLGYIHQGHFLLTPLSCDTLESASSFSSDQCSEGVVAVAGDALRIFTIERLG
ETFNETAIPLRYTPRKFVILPKKKYIAVIESDKGAFSAEEREAAKKECLEASGAAENGNA
NNGDPMENGDGQEDGAEEGNTFPDEQYGYPKAESERWVSCIRILDPRSRDTTCLLELQEN
EAAVSICTVNFHDKEHGTLLAVGTAKGLQFWPRRTLAGGFIHIYKFVDEGRSLELLHKTQ
VEEVPLALCQFQGRLLAGVGSVLRLYDLGKRKLLRKCENKLFPRTIVSIHTYRDRIYVGD
MQESFHYCKYRRDENQLYIFADDSVPRWLTAAQHIDFDTMAGADKFGNIYFARLPQDISD
EIEEDPTGGKIKWEQGKLNGAPNKVEEIVQFHVGDVVTCLQKASLIPGGGECLIYGTVMG
SVGALLAFTSREDVDFFSHLEMHLRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQYPS
LPADMQRKIADELDRTPGEILKKLEDIRNKII
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagcctgacgctgcagcgagcgacgggcgcggtgtgcgccgtcattggc
agcttcagtgggcgggactcgaagaagtcggccgcctccggctccggctccggctccacg
caggagatcgccgtggcccggggcagcacgctcgacctcctccgcccggacccggagacg
ggccgcctccgcacgctcctctccgtcgacgtcttcggcgccatccgctcgctcgcgcag
ttccgcctcaccggcgccaacaaggactacctcgtcgtcggctccgactcgggccgcctc
gtcatcctcgagtactcccccgaccgcaaccgcctcgacaaggtccaccaggagaccttc
ggcaagtcgggatgccgccgcatcgtccccggccagctcctcgccgtcgaccccaagggc
cgcgcgctctgtatcgccgcgctcgagaagcagaagctcgtctacgtactcaaccgcgac
gccgccgcgcgcctcaccatctcgtccccgctcgaggcccacaagtccaatactctcacc
ttcgccctcgccgcgctcgactgcgggttcgacaaccccgtcttcgccgccatcgagctc
gagtacgccgagtctgaccgcgaccccacgggacaggctgccaaccaggcgcagaagctc
ctcaccttctacgagcttgacctggggctcaaccatgtctcccgcaaggtctctgagccc
attgataatggtgccaatcttctagtgactgtccctggtggcggtgacggtccgagtggg
gttctcgtgtgctgcgacaatttcgtgctgtaccggaaccagggtcacccagagattcgt
gctgttattccacggcgtgctgacctccctgctgagcgtggcgtcctcattgttgctgcc
gccacacacaaacaaaagagtatgttcttcttcctgctacagactgagtatggtgacatc
ttcaaggttgaccttgatcataatggggatactgttagtgagctcaggatcaagtacttt
gacaccataccagtgacatcagctgtctgtgtgctgcgatcgggtttcctctttgctgct
tctgagtttggcaaccatgcactttaccagttccgtgatattggcagagatgcggatgtc
gagtcctcttctgcaacactgatggagacagaggagggattccagccagttttctttcag
ccaagggcactgaagaacctcatgcgcatagatgagattgagagcctcatgccagtcatg
gacatgcgtgtcgcgaatttatttgacgaggaaacaccccagttgttcactgcctgtggc
cgtggtccgcgctccacgctgcgcatcctgaggcctggccttgccatcagtgagatggcc
cgatcaatgttgcctgctgagcctattgctgtgtggactgtcaagaagaatatcaatgac
atgtttgatgcttacattgttgtgtcatttactaatgtcacgcttgtgctctctattggt
gagaccattgaagaagtcagtgacagccagttcctggacaccacacactcccttgcagtc
acgctccttggtgaggactctctaatgcaggtccacccaaatggcatccggcacatcagg
gaggatggtcgtgtcaatgagtggaggacgcctggaaagaaaactattacaaaggtcgga
tcaaaccgtctccaggtggtaatcgctcttagtggtggagagctcatctattttgagatg
gacatgactggtcagctcatggaggtggagaagcaggacatgtctggtgatgttgcatgc
ctggccattgcgccggtccctgaggggaggcaaaggtccaggtttcttgctgtaggatcc
tatgataacaccatccgtatcctctcactggaccctgacgattgcctgcagcctctaagt
gtccagagtgtatcatcggcaccagagtcactcttattcttggaggttcaggcctctatt
ggtggtgaggatggtgcagattatccagccaaccttttcctcaatgctggtctgcagaat
ggtgtccttttccggaccaatgtcgacatggttacgggtcagctatcggacacacgttct
cgattccttggcctgagacctccaaagttgttcccttgtgtagttagccacaggcaagca
atgctctgcctatccagccgtccttggctgggctatatacatcaaggccattttctcttg
acaccactgtcctgtgatacgcttgaatctgcatcatcattttcttctgatcagtgctca
gaaggtgtagttgctgttgcgggagatgccctacggattttcaccattgaacgcttggga
gagactttcaatgagacggccatccctctgcggtacaccccaaggaagtttgtgattcta
ccaaagaaaaaatatattgctgtcattgagagtgataagggcgcgttcagcgcagaagag
cgagaagctgctaagaaagagtgcctcgaggcttctggtgcagcagagaatggaaatgca
aataatggcgatccaatggagaatggtgatggtcaagaagatggtgctgaggagggcaac
acatttcctgatgaacaatatggttatccaaaggctgaatcagagaggtgggtttcctgc
attaggatccttgatccaaggagtagggacacaacctgtcttctggaattgcaggaaaat
gaggctgctgtcagtatttgcactgtgaatttccatgataaggagcacggaactctactg
gcggttggcactgccaagggattgcagttctggccaaggaggacccttgctggtggattc
atccacatatataagtttgtggacgaagggaggtcacttgaacttctacataaaacgcaa
gtggaggaagtacctcttgcactgtgccaattccagggacgattacttgcaggtgttggt
tcagtgctcagactatacgatctggggaagagaaaattgctcagaaaatgtgaaaacaag
ctttttccaaggacaatagtgtctatccatacctaccgtgataggatctatgttggtgat
atgcaagagtcatttcactattgcaagtacagacgagatgaaaaccaactctatatattt
gctgatgatagtgttcccagatggcttacagcggcacaacacatagattttgacactatg
gctggagcagataagtttgggaatatatattttgctcgtcttcctcaggatatctcagat
gagattgaagaagacccaactggaggcaagattaaatgggagcaagggaagttaaatggt
gcccctaacaaagttgaagagattgtgcagtttcatgtcggtgatgttgtaacatgtttg
cagaaggcctctttgattcctggtggaggggaatgtcttatttatgggactgtgatgggc
agtgtgggagcactgcttgcattcacctccagggaagatgttgacttcttttctcacttg
gagatgcatcttcgtcaggagcatccaccattatgtggaagagatcacatggcttacaga
tctgcttattttccagtgaaggatgtgatagatggtgatctctgcgagcagtatccctcc
ctcccagctgatatgcagaggaagattgctgatgaactggacagaactcctggtgagatc
ctgaagaagctagaagacatcaggaacaaaatcatctaa
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