Sorghum bicolor (sorghum): 8057787
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Entry
8057787 CDS
T01086
Name
(RefSeq) protein RRP6-like 2 isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8057787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8057787
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
8057787
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-GeneID:
8057787
NCBI-ProteinID:
XP_021321232
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All DBs
Position
1:complement(27534622..27538561)
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AA seq
336 aa
AA seq
DB search
MFNRLKIDFLSNHNQASRVLQMERNSLEHLLLHFCGVTAKKEYQNADWRSRPLPDEMIKY
AREDTHYLLYIYSYDLMRQRLQRESTFENDLLLEVHKRSNEICLQFYEKELLTDTSYLHI
YGLQEHELDAKQLAVVAALHEWRDSIARQEDESTGYILPNKAFLLLWCKIRYATSLTPPP
LFFNSKAKQMPTDVGHLKRIVKSKCPYVESNLELIAYTVWNALKYSYAFEGIAEQLKKER
LEQLALKSGQASDEVTPLDADIDRSNFDSSDQSANINVASGSGAGFMSEAALISSIHLED
KTQTISSVKTSETLSGLIRLVNKDVLSNNIHQQALH
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatagactgaagattgattttctttctaaccataatcaggcttcaagggtctta
cagatggagagaaacagccttgagcacctattgcttcacttttgtggggtgacagcaaag
aaggaatatcaaaatgcagactggaggtcaaggccacttcctgatgaaatgatcaagtat
gctagagaagatacacactatctgctgtacatatattcctatgacttaatgagacagaga
ctacagagggagtcaacatttgaaaatgatcttcttctagaggtccataagcgcagtaat
gaaatttgcttacagttctatgagaaggagcttctgacagatacgtcctatctccacata
tacgggttgcaggaacatgaactggatgcaaaacagctggctgttgttgctgctctacat
gagtggagagatagtatagctcgtcaggaagacgaaagtactggttatatactgccaaat
aaggcttttttgttattatggtgcaaaattagatatgcgacttcgctgactccgccaccc
cttttttttaattcaaaagcaaagcagatgcctacagatgttggacatttgaaaagaatt
gtgaaatcaaaatgtccatatgttgagagcaatcttgagctaattgcttacactgtctgg
aatgcacttaagtattcttatgcctttgaaggaatagctgagcaactaaaaaaggaacgg
ctggaacagttggcattgaaaagtggtcaggccagtgatgaagtgactccattggatgct
gacattgataggagtaattttgattcatctgatcagtctgcaaatatcaatgttgcttct
ggcagtggggctggttttatgagtgaagcagctttgatcagcagcatccacctagaggat
aaaactcaaaccatatcctcagttaagacctctgagaccttgtcaggcctgatcagacta
gtgaataaggatgtcctgagcaataatatacatcagcaggcactacattag
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