Sorghum bicolor (sorghum): 8058355
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Entry
8058355 CDS
T01086
Name
(RefSeq) geranylgeranyl pyrophosphate synthase, chloroplastic
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi00900
Terpenoid backbone biosynthesis
sbi01100
Metabolic pathways
sbi01110
Biosynthesis of secondary metabolites
Module
sbi_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
8058355
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
sbi01006
]
8058355
Enzymes [BR:
sbi01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
8058355
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
8058355
2.5.1.29 geranylgeranyl diphosphate synthase
8058355
Prenyltransferases [BR:
sbi01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
8058355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
UbiA
Motif
Other DBs
NCBI-GeneID:
8058355
NCBI-ProteinID:
XP_002463084
UniProt:
A0A921UUW7
C5XCF6
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All DBs
Position
2:complement(71644544..71646295)
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AA seq
371 aa
AA seq
DB search
MAMAFHFHPLAATRVHLSPLPFAAAAAAGAPSPSSSSVAIAAPHHHHGRRRFSAVVATAA
ASAAATTEFDFKAYMGERAVAVNRALDAAIPAGEPPAALHDAMRYALLAGGKRVRPALCL
AACAVVGGPEAWAMPAAAAVEMVHTMSLVHDDLPCMDDDDLRRGKPTCHVVYGEPIAVLA
GDALLSLSFHHMASVGSYPPDVDPEKHPARVVRAIGELARCIGSEGLVAGQVVDLEMTGT
SEPVPLERLEYIHLHKTAALLEASVVIGAIIGGGTDEQIERLRKYARSIGLLFQVVDDIL
DVTKSSEELGKTAGKDLASDKTTYPKLLGLEKSREFAEKLLSDAIEQLDCFDKEKAAPLL
HLANYIAHRQN
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atggccatggccttccacttccacccgctggccgccacgcgcgtccacctctccccactc
ccgttcgccgccgccgccgccgcgggggcgccctccccctcgtcctcctccgtcgccatc
gcggcgccccaccaccaccacggccgccgccgcttctccgccgtcgtggccacggcggcc
gcctccgcggcggccaccacggagttcgacttcaaggcgtacatgggggagcgcgcggtc
gcggtgaaccgtgcgctggacgcggccatccccgccggggaaccccccgccgcgctgcac
gacgcgatgcggtacgcgctgctggcgggcgggaagcgcgtgcgcccggcgctgtgcctg
gccgcgtgcgccgtggtgggtgggcccgaggcctgggcgatgcccgccgccgcggccgtc
gagatggtgcacaccatgtcgctcgtccacgacgacctcccctgcatggacgacgacgac
ctccgccgcggcaagcccacctgccacgtcgtctacggcgagcccatcgcggtcctcgcc
ggggacgcgctgctctcgctctccttccaccacatggccagcgtcgggtcctaccctccg
gacgtagacccggagaagcatcccgcccgcgtcgtccgagccattggcgagctcgcgcgc
tgcatcggatcggagggactcgtcgccggccaggttgtcgatcttgagatgacgggcaca
tctgaacctgtgccccttgaacgccttgagtacatccatctccacaagactgccgcattg
cttgaggcctcagtggtgattggggcaatcattggaggcggcacggatgagcaaattgag
cggctgcgaaaatatgcgaggtcaatcgggctgctgttccaggtggtcgatgacattctt
gatgtcaccaagtcgtcagaggagctcggcaagacggcagggaaggacttggcaagtgac
aagacgacgtacccaaagctattggggttagaaaagtcacgcgagtttgcagaaaagttg
ctttctgatgcaatagagcagcttgattgtttcgacaaggagaaggcagcacctctgttg
catttggccaactatatcgcccataggcagaactga
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