Sorghum bicolor (sorghum): 8058559
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Entry
8058559 CDS
T01086
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1 isoform X2
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi04120
Ubiquitin mediated proteolysis
sbi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
8058559
04120 Ubiquitin mediated proteolysis
8058559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sbi04121
]
8058559
Enzymes [BR:
sbi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
8058559
Ubiquitin system [BR:
sbi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
8058559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_11
zf-RING_16
zf-HC5HC2H
zf-RING_5
zf-C3HC4_4
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
8058559
NCBI-ProteinID:
XP_002449013
UniProt:
C5Y508
A0A921UF79
LinkDB
All DBs
Position
5:3714378..3719492
Genome browser
AA seq
505 aa
AA seq
DB search
MIRLPTYAAFSLLATASAAYYAFSSREQFYPAMVYLSTSKICFVLLLNTGLVAMCVAWQL
ARRLFLGPLREAEVERLNEQSWREVIEILFAVTIFRQDFSVSFLAMVAALLLVKALHWLA
QKRVEYIETTPSVPLLSHVRIVSFMVFLLTVDCLFLSNSLRSLIQKREASVAIFFSFEYM
ILATSTVSTFVKYIFYVSDMLMEGQWERKAVYTFYLELISDLVHLSLYMLFFIAIFLNYG
VPLHLIRELYETFRNFRIRIADYVRYRKITSNMNERFPDATAEELDASDATCIICREEMT
TAKKLLCGHLFHVHCLRSWLERQHTCPTCRAPIIPADNGRAASARQHGAQAGVQPAAGTA
TPSSEGAPGENISRRQAKLEAAAAAASLYGRSFVYPPANTLNRSGPPQSTSSTPQSEASS
SNQSQKDQEMQLQNSSDGLVPLHVNANGAVGSGTSTRDLENSLQKAQENFIKSQIEMLQI
QLQMVQRGAAASASNNGNAEHRKND
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgatccgactaccgacgtacgcggcgttcagcctgctggcgacggcgtcggcggcgtac
tacgcgttcagcagccgggagcagttctacccggcgatggtgtacctctccacgtccaag
atctgcttcgtgctgctcctcaacacgggcctcgtcgccatgtgcgtcgcctggcagctc
gccaggcgcctcttcctcggcccgctccgggaggctgaggtcgagcgcctcaacgagcag
tcctggcgggaggtcatcgagatcctctttgctgtcaccatcttccggcaggacttctcg
gtgtccttcctcgccatggtcgccgcgctgctcctcgtcaaggcgctgcactggctcgcg
cagaagagggtcgagtacatcgagaccaccccctcggtgcccttgctctcgcacgtcagg
atcgtctccttcatggttttcctgctcaccgtcgactgcctcttcctgtctaactcgctc
aggtcactcatacagaagcgggaggcatccgttgccatcttcttctcctttgagtatatg
atattagcaacatccacagtatcaacattcgtgaagtatatattctatgtcagtgacatg
ctaatggaaggccaatgggagagaaaggcagtgtatacattttacttggagctcatcagt
gaccttgtgcacttgtccttatacatgctcttcttcatagctatcttcctgaactacggt
gtcccactgcacttgattcgtgagctatatgagaccttccgcaacttcagaatccgcatt
gcagattatgtgcgctacagaaagatcacttccaacatgaatgaacgctttccagatgct
acagcagaagagctcgatgcgagcgatgctacatgtattatttgccgtgaggagatgact
acagcaaagaaactgctctgcgggcatctgttccatgtgcattgtctaaggtcttggcta
gagcgccagcacacttgccctacatgcagagctccaatcattcccgcagataatggacgc
gctgcatcagcacgacaacatggagctcaagctggagttcagcctgctgcaggtactgct
actccatcctcagaaggagcaccaggtgagaacataagcaggcgccaagcaaaacttgaa
gctgctgcagcggcagcttctttatatggaagatcttttgtttatcctccagcaaacacc
ctaaacaggtctggtcctccccagtctacatcaagcacaccacaatctgaagcaagtagc
tccaatcagtcacaaaaagaccaagaaatgcagttacaaaacagcagtgacggtttagtg
cctctgcatgttaatgcaaatggtgctgttggttcaggaacaagcacaagggatcttgaa
aattcattgcagaaggcacaagaaaactttattaagagccagattgagatgttacaaatc
caactgcaaatggtgcagcgtggtgctgctgcgtcggccagtaacaatgggaatgctgaa
cacagaaagaatgactga
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