Sorghum bicolor (sorghum): 8058940
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Entry
8058940 CDS
T01086
Name
(RefSeq) DNA excision repair protein ERCC-8 isoform X2
KO
K10570
DNA excision repair protein ERCC-8
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03420
Nucleotide excision repair
sbi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
8058940
09124 Replication and repair
03420 Nucleotide excision repair
8058940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sbi04121
]
8058940
03400 DNA repair and recombination proteins [BR:
sbi03400
]
8058940
Ubiquitin system [BR:
sbi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
8058940
DNA repair and recombination proteins [BR:
sbi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
8058940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_EML_2
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_SPT8
ANAPC4_WD40
Beta-prop_WDR75_1st
NBCH_WD40
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_Nup120_160
Beta-prop_WDR75_2nd
Beta-prop_RIG_1st
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
8058940
NCBI-ProteinID:
XP_002456663
LinkDB
All DBs
Position
3:67986561..67989920
Genome browser
AA seq
450 aa
AA seq
DB search
MWMDEVRGRERGELRARRFQAGARARRAASLALSNRKEFATPHHGAVNSLQVDLTEGRYL
LSGASDGSAAVFDVWNATEYEAGFIAKHRNILLVDKQHQNGHRFAVSAAVWYPVDTGLFV
TASFDQYVKVWDTNSTQVVMEFKMPGKVYTAAMSPVATTHMLIGTGTADVQVRLCDIASG
AFTHTLSGHRDGIMSLEWSASSEWILMSGGCDGAIRFWDIRRAGCFQVLDQSRSQLGKRP
PLVKSAVDNDHTDSLGPSPSTRSLAQKRAGISKKSSPALRKIQNLTHGQMQQRLHPGLSS
SQNRATAHYGAVTGLRTTTDGMYLLSSGSDSRLRLWDIDSGCNTLVNFEAMRLQTGKPLQ
LAVTEDPSLVFVPCMASIKAYNLWSGTTFRTFRGHYELVNCCYYSEQDQELYTGGNDRQI
LVWTPSTPAFTEMEDHDKTLSGADEDNWSD
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgtggatggacgaggtgagggggagggagcgcggggagctgcgcgcccggcggttccag
gccggcgccagggcgcgccgcgcggcctcgctcgcgctctccaaccgcaaggagttcgct
accccgcaccacggcgccgtcaactcgctccaggttgatttgacagaggggaggtacctg
ctctccggggcatcggatgggtcggccgctgtgttcgatgtgtggaacgcgaccgaatac
gaagccgggttcatagccaagcacaggaacatactgcttgtggacaagcaacaccagaat
ggccacaggttcgccgtctcggcggccgtttggtatcctgtggatacggggctgtttgtc
acagcatcctttgaccagtatgtcaaagtttgggataccaattcgactcaggtcgtcatg
gaatttaagatgcctggaaaagtgtacactgcagccatgtctccggtcgcaacaacgcac
atgctcatcggtactgggaccgcagatgttcaggtccgtctgtgtgacattgcttctgga
gcctttacccacacgttgtcaggtcatcgtgatggtatcatgtctttggagtggtctgcc
tcaagtgagtggattttgatgagtggtggctgtgacggggcaatacgtttttgggacatt
aggcgagctggatgctttcaggttctggatcaatcacggtctcaacttggaaagaggcct
cctcttgttaaaagtgctgtagataatgatcacacagattccttaggaccttcaccttcc
acaaggagcttagctcagaaaagggcaggcatttctaagaagagctcaccggctttgcgc
aaaattcaaaacctaacacatggacagatgcaacagagattgcatcccggtttgtcatcc
agtcaaaaccgtgctacagctcattatggtgctgttactggattacgaacaactacagat
gggatgtaccttcttagctcaggatctgattctcgtttaagactgtgggatatcgattca
ggctgcaatactctggtcaattttgaagctatgcgattgcagacaggcaagccattacaa
ttagctgtcactgaggatccttcacttgtatttgttccatgtatggcaagcatcaaggca
tacaatttatggtctggtacaacatttcgaacatttcgagggcactatgaacttgtgaat
tgctgctactatagtgaacaggaccaagaactttatactggcggaaacgacaggcaaatt
cttgtgtggactccatcaactccagcttttactgaaatggaagatcatgacaagaccctt
tcaggagctgatgaggataactggagcgactaa
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