Sorghum bicolor (sorghum): 8059278
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Entry
8059278 CDS
T01086
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi00040
Pentose and glucuronate interconversions
sbi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
8059278
Enzymes [BR:
sbi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
8059278
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Lamprin
Motif
Other DBs
NCBI-GeneID:
8059278
NCBI-ProteinID:
XP_021304221
LinkDB
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Position
1:22258462..22262330
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AA seq
482 aa
AA seq
DB search
MARPPKSTGIAFSLLLLAAAAAASDLLLLNSTLPDPAAVVADLHSKVAMSRRRMQEAGGA
SGGGGCLTGNPIDDCWRCSGTDWRQDRQRLADCGIGFGRNALGGKGGPVYVVTDSSDGDP
VNPVPGTLRHAAIQEGPLWIVFASDMAIRLNEELLVNSYKTIDGRGARVHIGGGGACITL
QYVSNVIIHNVHVHDCVPAGNANVRSSPTHYGWRTRSDGDGISLFGARDVWVDHCALWRC
ADGLVDAIMGSTAITVSNSYFAHHDEVMLLGASDAYLPDSGMQVTIAFNRFGPGLVQRMP
RCRRGYFHIVNNDYTSWEMYAIGGSANPTINSQGNRYIAPGDPNAKEVTKRVDTAEGQWN
GWNWRTEGDMMVNGAFFVPSGEGLEEIYDKASSTDPKSSALVDVLTQNAGVLGDPRNDAE
ETGYRGVNYAGVGTGGGGGNGYGYLGMVYANGGGDRRSRSQSALSLISSVTTLIALGCLR
LL
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcccggcctcccaaatccaccggcattgccttctccctcctcctgctggcagccgcc
gccgccgcctcggacctccttctcctcaactccacgctccccgaccccgccgccgtcgtc
gccgacttgcacagcaaggtggcgatgtcgcggcggcggatgcaggaggccggcggggcc
agcggcggcggcgggtgcctgacgggcaacccaatcgacgactgctggcggtgctctggg
acggactggcggcaggaccggcagcggcttgcggactgcggcatcgggttcgggcgcaac
gcgctgggcggcaagggcggtccggtgtacgtggtgacggactcgtcggacggcgacccc
gtgaacccggtccccggcacgctccggcacgccgccatccaggaaggcccgctgtggatc
gtgttcgcgtcggacatggccatccgcctgaacgaggagctgctggtgaacagctacaag
accatcgacgggcggggcgcgcgcgtgcacatcggcggcggcggcgcgtgcatcacgctg
cagtacgtgtccaacgtgatcatccacaacgtgcacgtccacgactgcgtccccgccggc
aacgccaacgtgcggtcctcgccgacgcactacgggtggcgcaccaggtcggacggcgac
ggcatctcgctgttcggggcacgggacgtgtgggtggaccactgcgcgctgtggcggtgc
gccgacgggctggtggacgccatcatggggtcgacggccatcaccgtgtccaacagctac
ttcgcgcaccacgacgaggtgatgctgctgggcgccagcgacgcgtacctgccggactcc
gggatgcaggtcaccatcgcgttcaaccggttcggccccgggctggtgcagcggatgccg
cgatgccggcgagggtacttccacatcgtcaacaacgactacacgtcgtgggagatgtac
gccatcggcggcagcgcaaaccccaccatcaacagccagggcaaccgctacatcgcgccc
ggcgacccaaacgccaaggaggtgacgaagcgggtggacacggcggagggtcagtggaac
gggtggaactggcggacggagggcgacatgatggtgaacggcgccttcttcgtgccgtcc
ggagagggcctggaggagatctacgacaaggcgtccagcaccgacccaaagtcgtcggcg
ctcgtcgacgtgctcacgcagaacgccggcgtcctcggcgatcccaggaacgatgccgaa
gaaaccgggtacaggggtgtcaactacgccggcgtgggaactggcggcggtggcggcaac
ggctacggctacctcgggatggtctatgccaacggtggcggcgatcggagaagcagatca
cagtcggcgctgtcattgatttcttcagttaccaccctcattgcgctcggatgcttgcgc
ttgttgtaa
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