Sorghum bicolor (sorghum): 8059775
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Entry
8059775 CDS
T01086
Name
(RefSeq) ruBisCO large subunit-binding protein subunit alpha isoform X1
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8059775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8059775
03110 Chaperones and folding catalysts [BR:
sbi03110
]
8059775
03029 Mitochondrial biogenesis [BR:
sbi03029
]
8059775
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sbi04147
]
8059775
Enzymes [BR:
sbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
8059775
Messenger RNA biogenesis [BR:
sbi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
8059775
Chaperones and folding catalysts [BR:
sbi03110
]
Heat shock proteins
HSP60 / Chaperonin
8059775
Mitochondrial biogenesis [BR:
sbi03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
8059775
Exosome [BR:
sbi04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
8059775
Exosomal proteins of other body fluids (saliva and urine)
8059775
Exosomal proteins of breast cancer cells
8059775
Exosomal proteins of colorectal cancer cells
8059775
Exosomal proteins of bladder cancer cells
8059775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
DUF1382
Ribosomal_L12
Motif
Other DBs
NCBI-GeneID:
8059775
NCBI-ProteinID:
XP_002459819
UniProt:
A0A921RNA3
C5X5T6
LinkDB
All DBs
Position
2:18575129..18579535
Genome browser
AA seq
585 aa
AA seq
DB search
MYLTAVSFAPAAGFSPSSQQLLPRSARVGRRLVVRADVKVISTGEACRRGLAAGIDKLAD
AVAVTLGPKGRNVVIDQDDVPKVINDGVTIAKAIELPNALEHAGATLLQEIASKTNSAVG
DGTTTAIVLAREIINLGLLAVATGANPVALRRGIDKAVHELIKILKSKCIPVSTKEDIKA
VASISSGNDEYVGNLIADAMEKIGPDGIIKIESSSSIYTTVEVQEGMKIDKGYVSPYFIT
NQDKAIVEFENARVLLTDQRVNEVQEILPLLEKTTQLSVPLLIIAEDVSHEVYSTLVLNK
LNGLLNVAVVKCPGLGDEKKAILQDIAIMTGADFFASDLGWGLHGITSDQLGMAQKITIT
SESTTIIAHPSMRPEIEARIMQLKKDLEETTSSYLKERFSARIAKLSRGVGVIKVGAATE
AELEDRKLRVEDAKNATFAAISEGITPGGGVTYVHLSKHIPSIMDLVDDAEEKMGVNIVG
KALLVPAMTIARNAGAEGPAVVEKLLASEWRVGYNAMTGEFEDLVAAGVVDPCRVARCVL
QNSASIAGLILMTQAMMFDKVKKKKSPIPDIPGIPPLQISQKAKA
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgtacctgaccgccgtttccttcgcccccgcagccggcttctcgccctcatctcagcag
ctgctgcctaggtcggccagggtcggccgccgcctggtggtccgggcagacgtcaaggtc
atatcgaccggcgaggcctgccgtcgtgggctcgccgccggcatcgacaagctcgccgac
gccgtcgccgtcaccctcggccccaaagggaggaatgttgttattgaccaagatgatgta
cctaaagtaattaatgatggtgtcacaattgccaaggctatagagctcccaaatgcgctt
gagcatgcaggtgccacgctacttcaagagatagcatccaagacaaatagtgctgttggc
gatggaactacaacagcaattgttttggctcgggaaatcatcaatcttgggttgttggca
gttgcaactggtgctaacccagttgcattgagaaggggtattgacaaagccgttcatgag
ctaattaagatcttgaagagtaaatgtatccctgtgagtacaaaggaggacataaaagct
gttgcttcaatatcatctggcaatgatgaatatgttggcaatctcattgctgatgcaatg
gagaagataggtcctgatggtataatcaaaattgagtcatcatcttcaatatacacgaca
gttgaggtccaggaaggaatgaagatagacaagggatatgtttctccatacttcatcaca
aatcaagacaaagcaatcgttgaatttgaaaatgctagagtgcttttaactgatcagcgt
gtgaacgaagtccaagagatacttcccttgctggagaagacaacacagttgagtgtccct
ttattaattattgctgaggatgtgtcacatgaggtgtattcaacactggttcttaacaaa
ctgaatggattgctaaatgttgcggtcgttaaatgtcctgggttgggagatgaaaagaag
gctattctccaagatattgctattatgacaggtgcagatttctttgctagtgaccttggc
tggggtcttcatggcattacttctgatcagcttggtatggctcagaaaatcacaataact
agtgaatctacaactatcatagcacatccttcaatgagaccagagatcgaggccagaatc
atgcaactgaaaaaagatctagaggagacaacgagttcctatctaaaggaaaggttctct
gcgagaatcgctaaactttcgagaggtgttggagtcatcaaggttggggcggccactgaa
gctgaactcgaggataggaaactgagagtggaggatgcaaagaatgcaacttttgcagcc
attagtgaaggcataactcctggtggtggggtgacatatgttcatttatcaaagcatatt
cccagtatcatggacctagttgatgatgcagaagagaagatgggtgtaaatatagttggg
aaggcacttcttgtccctgctatgacaatagctcgcaatgccggggcagaaggtccagct
gttgtggagaagcttctcgccagtgagtggcgggttggttacaacgcaatgactggcgag
tttgaagaccttgttgctgctggtgtggtggacccatgcagggtcgcaagatgcgtgctc
cagaactctgcttctatcgcagggctgattcttatgactcaagctatgatgtttgacaag
gtaaagaagaaaaagtcccccatcccagatattcctggtattccaccgttacagataagc
caaaaggctaaggcttga
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