Sorghum bicolor (sorghum): 8060118
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Entry
8060118 CDS
T01086
Name
(RefSeq) nuclear pore complex protein NUP62 isoform X1
KO
K14306
nuclear pore complex protein Nup62
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
8060118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8060118
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
8060118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
Nucleoporin_FG
COG3_N
Flagellar_rod
SGT1
Motif
Other DBs
NCBI-GeneID:
8060118
NCBI-ProteinID:
XP_021313080
LinkDB
All DBs
Position
3:complement(67920235..67926461)
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AA seq
756 aa
AA seq
DB search
MATSFGFGGSAAAGSTASSPFSFSSTPSAFSFSQPAAASSPAPTFGSSLFSSSSAAASSA
PTFGSSLFGASSAAAPASSPAFGFGSTAFSFGQSTAAASSAASAPSLFGATPASSAGTTP
SLFGAATSAASSPGLFGAASAAASSPGLFGASATGSAATSSGLFGGTASPGLFGGASSAA
TTPSPFGATSSAAATASLFGAASSAASTPSPFSGAATGFSFGSSASGSTTTTPAASAPSF
GFSFNSGAAASSAASTATSAPALGFGVATGSSLFASTTSAPLFSSTTVSSPAPAATTTPS
FGFSSSPATTASAPSFGFTPPAGSATTANTAPSLFSSASSSPAFAFAKSTSTTTVTTPSS
SPSTGFSSATSQAAPAPSVFSNTSAAGSSSATTPGFSFGSSSAASTPTLASMSTTGASTV
PSAAAASATSGSLFPAASSTSSFSFAVAPSSSSAAAATATTTTVTSASTSAGMTTTAPLT
GTTGFPNFNLQTTTPASTSSPTLAFGVSTTAASTSATSTTTQATSSAVQASSTGPTTTTS
ITPAASQAPKLPSEIVGKSVEEIIRDWNNELQDRTAKFRKHATAIAEWDKRILQNRNVLI
RLEAEVAKVVETQTGLERQLELIETHQREVDKALQSMEEEAERIFQDERVLLREDDAASA
RDTMYEQAEVVEHELQHMTEQVKSIIQTMNATQGGELESADSMTPFDVAVRILDNQLRSL
MWIDEKVNEFSGRIQRLPSNSASAERDSGIPRFWLS
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atggcgacctccttcggtttcggcggctccgcggccgcgggctccacggcctcctccccc
ttctccttctcctccaccccatccgccttctccttctcccagccggcggctgcctcctcc
cctgcccccaccttcggctcctccctcttttcctcatcctccgccgccgcttcctctgcc
cccactttcgggtcctccctgttcggggcctcgtccgccgctgcgcccgcctcctccccc
gctttcggcttcggatccaccgccttctcgttcggtcagtccacggcggccgcctcatcg
gccgcgtccgcgccatccctcttcggcgcaacgcccgcatcctccgccggaacaacccct
agtttattcggcgctgctacctccgccgcaagcagccctggcctcttcggcgccgcctct
gctgccgcaagcagccccggcctcttcggtgcgtccgccaccggctctgcagcgacctcc
tcgggtctgttcggcggtaccgcctccccgggcctattcggcggggcctcctccgcagcg
accaccccgagtccattcggggccacctcatccgcggcggcgacagctagtctgttcggc
gccgcctcttctgctgcgtccaccccaagccccttctctggagccgccacgggctttagc
tttggctcgtcggcgtccggttccaccactaccacacccgccgcctcggcaccatcattc
ggcttctcgttcaactcgggggcggccgcgtcaagcgctgcctccaccgcgacatcagca
ccggctttagggtttggcgtggccactggctcgtctctgttcgcatccaccacctctgcg
cccctcttcagcagcaccaccgtctcttctccagcgcctgctgcgacgaccacgccatcc
tttgggttctcttcctcgccagcaacaaccgcttccgccccatcgtttggctttacaccg
ccagcaggaagcgcgactacggcgaacacggctccttccttgttctcatctgcttcctcg
agccctgccttcgctttcgccaagagcacatccaccaccacagtaaccacaccgtcgtcc
tcgccctccactggcttctcctcggccacttcgcaggctgcacctgctccctcagtgttc
tctaataccagtgcagcaggtagctcgtctgccactacgcctggattctcctttggttca
tcttcggcagcttctacaccaactttagcttccatgtccacaactggtgcctccactgtg
ccatcagctgctgcagcttctgcaacatctgggtcactgttcccagctgcttcttctacc
agtagtttcagttttgcagttgctccatcatcgtcatcagccgcagcagctactgccact
accaccactgtcacaagtgcatctacatctgcaggcatgacaaccacagctcctttgact
ggaacaacggggtttccaaattttaatcttcaaacaactacaccagcttctacctcatct
cccacactggcatttggtgtttctactactgctgctagcacatcagccaccagcaccaca
actcaggcaacttcttcagctgttcaagctagcagcacaggtccaactactactacatct
atcactccagcagcgtcccaggcacctaagctaccatcagaaattgttggcaaaagtgtt
gaggagattattagggactggaacaatgagcttcaagaccgtactgcaaaattcaggaaa
catgccaccgcaatagctgaatgggataagagaattctgcaaaatagaaatgttcttatt
aggcttgaggctgaggtggctaaagttgttgaaacacaaacaggcttggagcgtcaactt
gagttgatagaaactcatcagcgcgaggtggacaaggctctacagagtatggaggaggaa
gctgaacgcatattccaggatgaacgagtgttacttcgtgaagatgatgctgcttcagca
agagatactatgtatgaacaagcagaagttgtggagcatgaactgcaacatatgacagaa
caagtaaaatccatcattcagactatgaatgctactcagggtggtgagcttgagtccgct
gatagtatgacaccatttgatgttgctgtccggatactggataatcaactgcgttccctg
atgtggattgatgaaaaggttaacgagttctctggcagaatacagaggctgcccagcaac
agcgcttcagctgaacgtgactctgggattcccaggttttggttaagctga
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