Sorghum bicolor (sorghum): 8060148
Help
Entry
8060148 CDS
T01086
Name
(RefSeq) protein VACUOLELESS1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
8060148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sbi04131
]
8060148
Membrane trafficking [BR:
sbi04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
8060148
Hops complex
8060148
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_C
Vps16_N
WD40_WDHD1_1st
Motif
Other DBs
NCBI-GeneID:
8060148
NCBI-ProteinID:
XP_021312866
LinkDB
All DBs
Position
3:58792118..58802286
Genome browser
AA seq
943 aa
AA seq
DB search
MGWTRPTCQHYWAAKRTPATPGSYTSAPKPPYLDPRVHLFHPARRSGRAPASPRLAAGDR
PHVCPAMSSSVSIAAEWDLLSDRFYRRLTLYSPLPWSAPAAAGATSSSSGVGGAVIGRLD
LSTHIVAAAPFGGPIAAVRDDSKIVQLHSEPSRRRLLLFSSSAHPIASAPWPPLLPRLHS
LAFSSSLSLLALLSDGSLLRFRLPDLQPSPSSSPVPLLPPDSGGVADAQFWGGGVAILTE
DNRVVVATDIEADDPHPRDLADPDIGDEEHVLCMAVVEPQFVMSGSPEVLLAVGDRVIAV
DEDGVQVLGVELEIGPVQKMAVSPNGKLLAAFAHDGRLLVIPTDFSRIIFEYECDSALPP
EQIAWCGLDSVLVYWPEVLLMVGPNGDPVQYNYDEPIKLIPECDGVRILSNSSMEFLHRV
PDSTTLIFGIGSMSPAALLYDARDHYDRQSAKAYDNYQLISSSLPEAIEACIDAAGHEFD
VSRQRTLLRAATYGLAFCSRFPHERFQEMCKMLRVLNAVRDPEIGMPLTIQQFKLLTATV
LIGRLINANQHLLALRISEYLNLNPEVVIMHWACEKITASTTLPDTVLLEGLLDKLRLCK
GISYAAVAAHADNSGRRRLAAMLVDHESQSSKQIPLLLSIDEQDKALSKAIESGDTDLVY
LVLFHIWQKVAVEKKAPLDFFGVINARPVARDLFMAYARHSKHEDLKDFFLSTGRLQDAA
FLLLKESRELDKNPMASKGSPLHGPQVRLIEQAHRLFAETKEHVFESKASEEHAKLLRSQ
HELEVSTKQPIFVGSSVSDTIKTCIAMGNERAALKVKSEFKVPDKRWYWLKTCALATVGN
WDALEKFSREKRPPGGYKPFVEACIDAGQKNEAVKYIPKLADPRERSEAYARMGMAREAE
EAASQAKDSDELFGRLKITLAQSSAAASIFDTLRDRLSFQGAY
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgggctggactaggcccacctgccagcactactgggccgcgaagcgaaccccggccacg
cccggttcctacacgtcagcgcccaagccaccgtacctcgatccccgagtccacctcttt
cacccagcccggcgatccggccgcgctcccgcctcgcctcgcctcgccgccggcgaccga
ccccacgtctgcccggcgatgtcctcctccgtctccattgcggcggagtgggaccttctc
tccgaccgcttctaccgccgactcacgctctactccccgctcccgtggtccgccccagct
gcggccggcgcgacctcgtcctcctccggcgtcggcggtgctgtgatcggtcgcctcgac
ctgtccacccacatcgtcgccgccgcgccctttggaggcccgatcgctgccgtccgcgac
gactctaagatcgtgcagctccactccgagccctcccgccggcgcctcctcctcttctcc
tcctccgcccacccaattgcctccgcgccctggccaccccttctcccgcgcctccactcg
ctcgccttctccagctccctcagcctcctcgcgctcctctccgacggctcgctcctccgc
ttccgcctccccgatctgcaacccagccctagctccagtccggttcccctgctcccgccg
gactcaggtggcgtcgccgatgctcaattctggggcggtggtgtagccatcctcacggaa
gacaaccgcgtcgtggtggccactgacatcgaggccgacgaccctcacccccgtgacctc
gccgacccagacatcggtgacgaggagcatgttctgtgtatggccgtggtggagccacag
tttgtcatgtcggggagcccagaagtattgcttgcggttggcgaccgggtcattgcggtt
gacgaggatggcgtacaggtgcttggggtggagctggagattggacccgtgcagaagatg
gcagtgtcacccaatggcaagcttcttgcagcgtttgcacatgatgggcgccttctcgtg
atccccactgatttctctaggatcatattcgagtatgagtgcgattctgcactgccacca
gagcaaatagcttggtgtggactagacagtgtactcgtatactggcctgaggtgctgttg
atggttggtccaaatggagatcctgtccaatataattatgatgaacccataaaactgatt
cctgagtgcgatggtgtaagaatcctctctaactcaagtatggaatttctacaccgagtg
ccggactctactacattaatttttggcattggaagcatgtctccagcggcattactgtat
gatgctcgtgatcactatgacaggcaaagtgcaaaggcttatgacaactatcaactaata
tcatcttcattgcctgaggcaattgaggcttgcattgacgctgctggccatgagtttgat
gtttcacgccagcgaacattgctgagagccgctacatatggcctagctttctgcagtcgt
tttccacatgaacgctttcaagaaatgtgcaaaatgttgagagttctaaatgctgttcgt
gatcctgagattgggatgccactaaccattcagcagttcaagctgcttactgcaacggtg
ctcattggacgtctcattaatgctaatcaacaccttttggcgcttcgcatctctgagtac
cttaacctgaacccggaggttgtgatcatgcattgggcatgtgagaagataacagcatca
acaactcttccggatacagtccttcttgagggtctgcttgataagctcaggctatgtaaa
gggatatcatatgctgcagtggcagctcacgcagataacagtggtcggcgaaggttggct
gcaatgctcgttgatcatgagtcacagtcctctaagcagattcccttgttgctaagcatc
gatgaacaagacaaagcattatcaaaggcaattgaaagtggcgatactgatcttgtgtac
cttgtgttattccatatctggcagaaggtagctgtagagaagaaagctcctttggatttt
ttcggtgttataaatgcaaggcctgtggctagagatttgtttatggcatatgcaagacat
tctaagcatgaagacttgaaggacttctttttatcgactgggagacttcaagatgccgcc
ttccttttgttgaaggaatcaagggaattagataagaaccccatggcaagcaaggggtct
cctctccatggtccacaagtgaggctcattgagcaggcccatagactttttgctgagacc
aaggaacatgttttcgaatccaaagcttctgaagagcatgccaaattgctaagatcacag
catgaacttgaagtttccacaaagcagccaatatttgtgggttctagtgttagtgataca
atcaaaacatgtattgcaatgggaaacgagcgagctgcactcaaagtgaagtccgagttc
aaggttcctgataagaggtggtactggcttaaaacgtgcgctttagccacagttggaaac
tgggatgctttggaaaaattttcaagagagaaaaggccaccaggaggctataaacctttt
gtggaagcatgcattgatgctggtcaaaaaaatgaagctgtcaaatatattccaaagtta
gcagatcctcgtgaaagatctgaggcatatgctcggatgggcatggcaagggaagctgaa
gaagcagcctcacaagctaaagatagtgatgagctatttggccgcctaaagattacactt
gcacagagcagtgctgccgcctccatttttgacacattgcgggatcggctatcttttcaa
ggagcgtattga
DBGET
integrated database retrieval system
