KEGG T01086: 8060251

Sorghum bicolor (sorghum): 8060251

Entry

8060251           CDS       T01086

Name

(RefSeq) probable CCR4-associated factor 1 homolog 7

K12581

CCR4-NOT transcription complex subunit 7/8

Organism

sbi Sorghum bicolor (sorghum)

Pathway

sbi03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:sbi00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    8060251
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sbi03019]
    8060251
Messenger RNA biogenesis [BR:sbi03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     8060251
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     8060251

SSDB

Motif

Pfam:

CAF1

Other DBs

NCBI-GeneID:

8060251

NCBI-ProteinID:

XP_002460215

UniProt:

C5XCU2

LinkDB

Position

2:59215698..59216983

AA seq 279 aa
MATPAAEKPEDVEIREVWADNLEAEFAVIRDIVDDYPYVAMDTEFPGVVCRPLGTYKTAA
EFNYATLKANVDMLKLIQLGLTFSDEHGGLPALGADGRPCVWQFNFRGFDPRTDVAASDS
IDLLRRSGIDFSRHAADGADARRFAELLMSSGVVLNSDVHWVTFHSGYDFGYLLKLLTGT
NLPDTMSGFFDLIKIYFPVIYDIKHLMRFCNSLHGGLNKLAELLDVARVGICHQAGSDSL
LTALSFKKLKEAYFNGLTEKYAGVLYGLGFEGGETTSAH

NT seq 840 nt +upstreamnt +downstreamnt
atggcgacacctgccgcagagaagccggaagatgtagagatccgcgaggtttgggcggac
aacctcgaggctgagttcgccgtgatccgcgacatcgtcgacgactacccctatgtggcc
atggacacggagttccctggcgttgtgtgccgcccgctcggcacttacaagacggcggcc
gagttcaactacgccacactcaaggcgaacgttgacatgttgaagcttattcagctcggg
ctcaccttctccgacgagcatggtgggctgccggcgctcggcgcagacggccgaccctgt
gtgtggcagttcaattttcgaggctttgaccctcggaccgatgtggctgcatctgactcc
atcgatctgctgcgccgcagtggtattgacttctctcgccatgctgctgatggagctgac
gcccgccgctttgctgagctgctcatgtcctccggcgtagtattgaattcagatgtgcac
tgggtgacttttcatagtggctacgactttggctacctgctcaagctactcaccggcaca
aatctgcctgatacaatgtcaggattcttcgatctcatcaagatttactttcctgttatc
tacgacatcaaacatttgatgaggttctgcaatagcctccatggagggctgaacaagctt
gctgagctgcttgacgtcgcaagggttggaatctgccaccaggcagggtctgattcgctt
ctgacagcgctgtccttcaagaagcttaaagaggcatacttcaacgggttaactgagaaa
tatgctggtgtgttgtatgggcttggctttgagggtggagagaccacctctgctcactga

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