Sorghum bicolor (sorghum): 8060410
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Entry
8060410 CDS
T01086
Name
(RefSeq) protein CTR9 homolog isoform X1
KO
K15176
RNA polymerase-associated protein CTR9
Organism
sbi
Sorghum bicolor (sorghum)
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbi03021
]
8060410
Transcription machinery [BR:
sbi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
8060410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_8
TPR_19
TPR_12
TPR_17
TPR_14
TPR_16
TPR_11
TPR_CcmH_CycH
TPR_7
TPR_6
TPR_9
ANAPC3
RPN7
TPR_10
ARM_TT21_2nd
Fis1_TPR_C
ARM_TT21_5th
E_motif
HAT_PRP39_C
Motif
Other DBs
NCBI-GeneID:
8060410
NCBI-ProteinID:
XP_002448364
UniProt:
A0A921QUM0
C5YE49
LinkDB
All DBs
Position
6:complement(53989407..54002933)
Genome browser
AA seq
1069 aa
AA seq
DB search
MTSVYIPVQGTEEEVRVALDQLPHDASDILDILKAEQAPLHLWLIIAREYFKQGKIEQFR
QILEEGSGPEIDEYYADVKYERIAILNALGAFHTFLGKVDRAPQKESHFKDATQYYNRAS
RIDETEPSTWIGKGQLCVAKGELQMASDSFKIVLDEDGNNFPALLGQASVYFLMGEGEQQ
HKKSLEHYRNSLDLYKRALRVYSNCPAAVRLGIAFCRYKLGQVEKARQAFQRVLELDPQN
VDALVALAIMDLQTNEAGGIRSGMEKMKKAFEIYPYYTLALNHLANHYFFTGQHFVVEQL
TETALSSSNHVLLKSHAYYNLARSYHSKGDIETAGRYYMASVNEISKPQDFVLPYIGLGQ
IQLKFGDLKSSLGSFEKVLEVHPENCESLKAIGHIHAKSGETEKAIETFKKVTRIDPKDH
QAFVELGELLVESDWAAAMEYLKTARNLLKKAGEAVPVELLNGIGLLHFEKGEFEMAEQS
FKEALGDGLWVSVMDGKVGSSMVNWSVQNKDQSFFHQLEEEGVPLELHSIKVTTLFNYAR
LLEELHDSVRASLFYRFIIFKYPDYIDAYLRLAAIAKQRNNVQLSIELIGDALKIDEKNP
NALSMLGSLELQSDETWLTAKEHFRSAKEATKGDTYSLLQLGNWNYFAANRPEKKAPKIE
ATHREKAMELYQSQVLKHHRSNMFAANGIGILYAEKAKWDVAKELFTQVHEAASGSIFVH
MPDVWINLAHTYFAQGHFQQAVKMYQNCLRKFFHNTDATILLYLARTHYEAERWQDCRKT
LLRAIHLAPSNYLLRFNVGVSMQKFSASTLQKAKQTVDEVRATVTELQNAIRVFSLLSVA
STYHSHGFDERKIETHVEYCKHLLNAAKVHRDAAEQAEQQNKQKMEVARQIALAEEARRR
AEEQRKFQLERRREEDELKQVKQQEEHFERVKEQWKTSSHTPGKRKDRSKTEDEEVGNEK
RRRKGIRRRKDQKTKMQYGEEEEDEYKDEPEADDDYADLARYNGADNSEKAPDHLLAAAG
LDDSDAEDDMGHPQSAIERKRRAWSESEDDEPVKKPAAPPSPGADGLSE
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgacgagcgtgtacatcccggtgcagggtacagaggaagaggtgcgggtggcgctggac
cagcttccccacgacgcatccgatatcctcgacatcctcaaggccgagcaggccccgctt
catctctggctcatcattgccagagaatacttcaagcaaggaaagatagagcagttccgt
cagattttggaggaaggatccggccctgaaattgacgagtattatgctgatgtgaagtat
gaacggatagcaatccttaatgctttgggtgctttccatactttcttgggaaaggttgat
agagcaccacagaaggaatcacattttaaagatgcaactcagtactataatagagcatca
aggatagatgaaactgaaccttctacatggatcggaaaaggtcaactctgtgttgccaag
ggtgagttgcaaatggcatctgactcattcaagattgtgttggatgaagatgggaacaat
tttccagctctacttggtcaggcctctgtttactttttgatgggcgaaggagagcagcag
cacaaaaaatcattggagcattataggaactcattagatctctacaagagagctcttcgg
gtctattccaattgtcctgctgctgtaaggcttggtatagccttttgccgatacaaactt
ggacaagtagaaaaagctcgtcaagcttttcagcgagttttagagttggaccctcagaat
gttgatgctctagtagcactggcaatcatggacttgcaaacaaatgaagctggtgggatt
cggagtggaatggagaaaatgaaaaaagcgtttgaaatctatccttattatacattggcc
ctcaaccaccttgcgaatcattatttctttactggccaacattttgttgttgaacaattg
actgagacagctctttcttcaagcaatcatgtactactgaaatcacatgcttactataac
ttagccagatcgtaccacagtaagggggacattgagactgctggacgatattacatggca
tctgttaatgaaatcagtaaaccacaagactttgtgttaccatatattggacttggtcaa
attcaattaaaatttggagacctcaaaagttcactaggtagctttgagaaagttttggag
gtgcaccctgaaaactgtgaaagtttgaaggctattggtcacatacatgcaaaatctggg
gaaactgaaaaagctatagaaaccttcaagaaagttacccgtattgacccaaaagatcat
caggcatttgtggaacttggtgaattgttggtagaatccgactgggctgctgctatggaa
tacttgaagacagctcgaaatctccttaagaaggcaggggaggctgtccctgttgagttg
ctcaatggaattggacttcttcattttgagaagggagagtttgagatggcagaacagagt
tttaaggaagcactaggtgatggtctttgggtttcagttatggacgggaaagtaggcagc
tctatggtcaactggagtgtccagaacaaggatcagagcttctttcaccaacttgaagaa
gaaggtgtacctcttgaattacattcaattaaagtaaccacactgtttaattatgcaaga
ttactggaagaactccatgattctgtcagagcaagcctcttttaccgtttcataattttc
aagtaccctgactacatagatgcctatctgaggctagcggctattgcaaaacaaagaaac
aatgttcaactgagcattgaactgataggtgatgctttaaagatagatgagaagaaccca
aatgcactgtctatgcttggaagtcttgaactccagagcgatgaaacctggcttactgca
aaggagcatttccgtagtgcgaaagaggccaccaagggagatacctactctttgcttcaa
ttggggaactggaattactttgctgccaaccgtcctgagaaaaaggccccgaagattgag
gctactcatagggagaaagccatggaactctatcagagtcaagtactaaagcaccaccgt
agtaatatgtttgctgcaaatggtattggaatcttatatgctgagaaggccaaatgggat
gtcgctaaggagttgttcacacaggtgcatgaagctgcatcaggaagtatatttgtacac
atgcctgatgtatggatcaatctggctcatacatattttgctcaaggtcattttcaacaa
gcagttaaaatgtatcaaaattgtttgcggaagttcttccacaatacagatgcaaccatc
ctattataccttgcccgaacacactacgaggctgagcgatggcaagactgcaggaaaact
ttgctgagagctatacatttggctccatcaaattacttgttacggtttaatgtaggagtg
tcaatgcagaaattctcggcttcaaccctgcaaaaggcaaagcaaacagttgatgaggtt
cgtgccacagtcactgaacttcagaatgctattagagttttcagtctgttgtccgttgca
tcaacgtaccactcccatggttttgatgagaggaaaatagaaactcacgttgagtactgt
aaacatttacttaatgctgctaaggttcaccgtgatgcagctgagcaagctgaacaacag
aataagcaaaaaatggaagttgctcgtcagattgctttggcagaggaagctcgccgaagg
gcagaagaacagagaaaatttcagttagaaaggaggagggaagaggatgagctaaagcaa
gtaaaacaacaggaggaacacttcgagcgtgtgaaggaacaatggaaaacatctagccac
acccctggcaagagaaaagatagatctaagactgaagatgaagaggtgggaaatgaaaag
aggaggaggaagggaattaggaggaggaaggatcaaaagacaaagatgcagtatggggaa
gaggaagaagatgaatacaaagatgaaccagaagcagatgatgactatgcagacctggcg
aggtacaatggtgctgacaattcagagaaagccccagatcaccttcttgcggctgctggc
cttgacgattctgatgctgaagatgacatgggccatcctcaatctgcaatagaacggaag
agacgagcttggtcagaatctgaagacgatgagccagtgaagaaaccagcagcaccacct
agcccgggcgctgatggtttgagtgaatga
DBGET
integrated database retrieval system
