KEGG   Sorghum bicolor (sorghum): 8060458
Entry
8060458           CDS       T01086                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
  KO
K14962  COMPASS component SWD2
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    8060458
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sbi03019]
    8060458
   03036 Chromosome and associated proteins [BR:sbi03036]
    8060458
Messenger RNA biogenesis [BR:sbi03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     8060458
Chromosome and associated proteins [BR:sbi03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     8060458
    COMPASS/SET1 complex (yeast)
     8060458
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 EIF3I WDR55 ANAPC4_WD40 NBCH_WD40 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_IFT122_1st Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_NUP159_NUP214 Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_SPT8 PQQ_3 PQQ_2 PQQ Beta-prop_Vps41 Beta-prop_SCAP Beta-prop_WDR35_TULP_N BBS2_Mid
Other DBs
NCBI-GeneID: 8060458
NCBI-ProteinID: XP_002447009
UniProt: C5YEP3
LinkDB
Position
6:54865273..54873347
AA seq 327 aa
MTSPPRVSMEITDDMLKSMEVGLAFRDYNGRISSMDFHSKATSYLVTASDDESIRLYDTQ
NAVCLKTINSKKYGVELVCFTDNPTIVLYSSKNGWDESLRLLSLNDNRFLRYFKGHLDRV
VCISFCSEKENFLSGSLDRTVLLWDQRAEKSQGLLRVQGRPAVSYDDQGMVFAVAYGGHI
RMFDARKFEKGPFEIFSVGNNDSEAHVIKFSSDGRRILLTTKAGRVHVLDSFHGNSIASY
NVKPVVTNSTLEASFSPDGNHIISGSGDGSVYAWNVRSGKVARWGSTDNEPPLVRWAPGS
LMFVTGSSELSCWVPDLSKLGSFTISK
NT seq 984 nt   +upstreamnt  +downstreamnt
atgacgagtccgccaagggtgagcatggagatcaccgatgacatgctcaagagcatggag
gtcggcctagccttccgggactataatggcagaattagttctatggattttcacagcaag
gctaccagctatctcgtgacagctagcgatgacgaatcaatccgcctatatgacactcaa
aatgcagtatgtttgaagactattaatagcaaaaaatatggggtcgaactagtgtgcttc
actgataacccaactattgtcttatattcatcaaaaaatggctgggatgaatctctgcgt
ctactctcactgaatgataaccggtttcttagatattttaaaggtcaccttgacagggtt
gtctgcatctcattttgctctgagaaagaaaactttctctctggttcacttgaccgtact
gttctcttatgggatcaacgagctgaaaaatcacagggcttactgcgtgtgcaagggagg
cctgcagtttcatatgatgatcagggcatggtatttgcagttgcctatggtggtcacata
aggatgtttgatgctcgaaaatttgaaaaggggccttttgagatcttctctgttggtaat
aatgattcagaagcccatgtcataaagttcagtagtgatggcaggcggattctgttaacc
actaaagctggacgtgttcatgtgctagattcattccatggcaatagcattgcatcgtac
aatgtgaagccagtggtaaccaattcaacactggaggcatcgtttagtcctgatggaaac
catatcatatctggctctggtgatggtagtgtttatgcttggaatgttaggagtggaaag
gtcgcacgctggggaagcacagataacgaaccgccactggtaaggtgggctccaggatcc
ttgatgtttgtgacaggatcatcagaactgtcatgttgggttccggatctgtccaagctg
ggatcctttaccattagcaagtag

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