KEGG   Sorghum bicolor (sorghum): 8060463
Entry
8060463           CDS       T01086                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    8060463
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:sbi04121]
    8060463
   03036 Chromosome and associated proteins [BR:sbi03036]
    8060463
Enzymes [BR:sbi01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     8060463
Ubiquitin system [BR:sbi04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    8060463
Chromosome and associated proteins [BR:sbi03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     8060463
    Noncanonical PRC1 (PRC1.1)
     8060463
    Noncanonical PRC1 (PRC1.3/1.5)
     8060463
    Noncanonical PRC1 (PRC1.6)
     8060463
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-C3HC4_3 zf-RING_5 zf-C3HC4_4 zf-rbx1 zf-RING_6 zf-RING_4 zf-UDP DUF4672 ZNF512_C2HC zf-C3HC4_5 FoP_duplication zf-Nse zf-RING_11 zf-RING_10
Other DBs
NCBI-GeneID: 8060463
NCBI-ProteinID: XP_021318272
LinkDB
Position
6:complement(54924658..54930311)
AA seq 485 aa
MPAKKRRFPSPPSKPHGDVAAPSPTSDAAAGGGVGEGRGGRPPLPSRGAARPRLTDPDPD
PDPEPQGGLEDDSDAEGDGDADDGDSESSQSDDGGTNEFMLVKLAEIRKEVQCPICLGII
RKTRTVMECLHRFCRDCIDKSMRLGNNECPTCRTHCASRRSLRDDPKYDALIAALYPDID
KYEEEEFAFSEQERIHNKKIQETIEETFRRQSDAIGKKRSMAKATATAFARKYRRTRGRV
RTIAPDIAPTGSADEDREEENSKETTREQCSTDDHSPDLRQKRCRKRSGPQGSPAGTIGS
IDHNCEENDELVGGKEILATSPLQGEMLAWGKNGTRSQNRHGSVGSNGRIGRSGRIAKLV
DHLRTADELDKEFQLYLVLLPVDGQTIPNLEKPYLSCRPTLSIQHLVQFVALQLSWKVEE
LEMYIRMDRHRLSVGSEPSSTGEAKPRPFDGLERLREDKLLSELHPSFASGNGNMELRYA
LKTRD
NT seq 1458 nt   +upstreamnt  +downstreamnt
atgcccgcgaagaagcgccggttcccatcgccgccttcgaaaccccacggcgacgtggcg
gctccaagtcccacctctgatgccgccgccggcggaggcgtaggagaaggaagaggaggg
cgcccgccgctgccgagcaggggcgccgccaggccgaggttgactgacccggacccggac
ccggacccggagccacagggcgggctcgaagacgattcggacgccgagggtgacggcgac
gcggacgacggcgacagcgagtcctcgcagagcgacgacggcggcaccaacgagtttatg
ctagtgaaattagcagagatacggaaggaggttcagtgccctatctgcttaggcattatc
cgaaagacaaggacagttatggaatgtttgcaccggttctgtagagactgtattgataaa
tctatgcgactaggaaataacgaatgcccaacatgtcgcactcattgtgcaagcagacgt
tctttgagggacgatcctaagtatgatgcgctgattgcagccttgtatccagatattgat
aagtatgaggaagaggaatttgctttcagtgagcaggagaggattcataataaaaagata
caagaaaccatcgaggaaacattccgaagacagtctgatgcaattggtaagaaacgttcc
atggcaaaagcaactgcaactgcctttgcaaggaagtacaggagaacccgggggagagtt
agaaccattgcccctgatattgcccctactggctctgctgacgaggatagagaagaagaa
aattccaaagagaccaccagagagcaatgttctactgatgatcattctccagatttaaga
cagaaaagatgcaggaagaggtctggaccacaaggatcacctgctggaaccattggcagt
attgaccacaactgtgaggagaatgatgaattagttggtggaaaagaaattttagccacc
tctccgttgcagggagagatgcttgcatgggggaaaaatggtacgcggagccaaaatcga
cacggtagtgttggttcaaatggcaggattggaaggagtggacgcattgcaaaattggtg
gatcacctccgtactgctgatgaattggacaaagagttccagctgtatcttgttctcctt
cctgtcgatggacaaaccatacctaacttggaaaagccttatctaagttgtcgaccaacc
ttgtccattcaacatcttgtacagttcgttgctctacaattgtcttggaaagttgaagaa
cttgagatgtacataaggatggaccggcaccgtttaagcgttggctcagagccttccagt
acaggtgaggcaaaaccacgtccatttgatggcttggaaagactgagggaagataaactt
ctttcggagcttcatccttcatttgcctctggcaacggtaatatggagttgcgatatgct
ttgaaaactcgagactag

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