Sorghum bicolor (sorghum): 8060623
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Entry
8060623 CDS
T01086
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
8060623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbi03400
]
8060623
DNA repair and recombination proteins [BR:
sbi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
8060623
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_I
MutS_IV
Motif
Other DBs
NCBI-GeneID:
8060623
NCBI-ProteinID:
XP_002463122
UniProt:
C5XD67
A0A921RTM0
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All DBs
Position
2:complement(72341337..72351211)
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AA seq
942 aa
AA seq
DB search
MEGDDFTPEGGKLPEFKLDARQAQGFISFFKRLPQDPRAVRLFDRRDYYTAHGENATFIA
RTYYHTMSALRQLGSSSDGISSVSVSKAMFETIARNILLERTDCTLELYEGSGSNWRLTK
SGTPGNIGSFEDLLFANNDMQDSPVIVALFPVCRESQLYVGLSFLDMTNRKLGLAEFPED
SRFTNVESALVALGCKECLLSEDCEKSIDLNPLRDAISNCNVLLTVKKKADFKSRDLAQD
LGRIIRGSVEPVRDLLSQFDYALGPLGALLSYAELLADDTNYGNYTIEKYNLNCYMRLDS
AAVRALNISERKTDVNKNFSLFGLMNRTCTVGMGKRLLNRWLKQPLLDVNEINNRLDMVQ
AFVEDPELRQGLRQQLKRISDIDRLTHALRKKSATLQPVVKLYQSCCRISYIKGILEQYN
GQFSTLIRSKFLEPLEEWMAEDRFGRFSSLVETTIDLGQLENGEYRISPLYSSDLGVLKD
ELSVVENHINNLHVDTASDLDLSVDKQLKLEKGPLGHVFRMSKKEEQKVRKKLTGSYLII
ETRKDGVKFTSSKLKKLSDQYQALFAEYTSCQKKVVGDVVRVSGSYSEVFENFAAVLSEL
DVLQSFADLATSCPVPYVRPDITVSDEGDIVLLGSRHPCLEAQDGVNFIPNDCTLVRGKS
WFQIITGPNMGGKSTFIRQVGVNVLMAQVGSFVPCDQASVSVRDCIFARVGAGDCQLHGV
STFMQEMLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLMEVTRAPTLFAT
HFHELTALAHKNDDEHQRVSNIGIANYHVGAHIDPSSRKLTMLYKVEPGACDQSFGIHVA
EFANFPEAVVALAKSKAAELEDFSTTPTFSDDSKDEVGSKRKRVFSPDDVTRGAARARLF
LEDFAALPVDEMDRSKIVEMVTKMKSDLQKDAADNPWLQQFF
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgacgacttcacgccggagggcggcaagctccccgagttcaagctagatgcg
agacaagcgcagggtttcatctccttcttcaagaggctgccgcaggatccccgggccgtt
cgtctcttcgaccgcagggattattacactgcccatggcgagaatgctacgtttattgca
aggacatactaccacacaatgtctgccttgcgtcaattaggtagcagctctgatggaata
tcaagtgttagtgtgagcaaggctatgtttgagaccattgcccgcaacattttgttggaa
aggactgactgtacattagagctctatgagggaagtgggtcaaactggaggttaacaaag
tctggaacacctggaaatattggtagttttgaagaccttctatttgcaaacaacgacatg
caagattcaccagtcattgttgctttgtttccagtgtgtcgggaaagtcagctgtatgta
gggcttagttttttggatatgaccaataggaagcttgggttggctgagttccccgaagat
agccgattcacaaatgttgaatcagctcttgttgcattaggttgcaaggagtgtcttctc
tcagaagattgtgaaaaatccattgatctgaatccccttcgagacgccattagtaattgt
aatgttctgttgactgtgaaaaagaaggctgacttcaaatccagggatcttgcacaagat
cttggtagaataatcaggggttctgttgagcctgtacgtgatctgctatctcagtttgac
tatgctcttggtccccttggagctcttttatcgtatgcagagttgctagcagatgatact
aactatggaaattacacaattgagaagtacaatttgaactgctacatgcgacttgattct
gctgcagtgcgagcattaaacatttcagaaaggaaaactgatgtaaacaagaacttcagt
ttgtttggtttgatgaacagaacctgtactgttgggatgggaaaaagattgcttaacaga
tggctgaaacaacctctattagatgttaatgaaattaataaccgattagacatggttcag
gcttttgtagaagacccagagcttcgtcagggactcaggcaacaacttaaaaggatatca
gatattgatcgtctaacacatgctctccgaaagaaatcagctactctgcagcctgttgtt
aagctttaccagtcctgttgcagaatctcatacatcaagggcattcttgagcaatataat
ggccaattttccacattgataaggtcaaagtttcttgaaccattagaagaatggatggca
gaggatcgatttggtcggttttcttctcttgttgagacaactattgatcttggtcagctg
gagaatggagagtacagaatatctcctctatattcttctgacttgggtgtactaaaggat
gagctttctgtggttgaaaatcacataaataatctgcacgtggatacagctagtgatctg
gatctttctgttgataagcaactgaagctagaaaagggacctcttggacatgtgttcaga
atgtcaaagaaagaggagcagaaagtcaggaagaagctcactggcagctacttaatcata
gaaactcgtaaagatggtgtaaagttcacaagttctaagctgaaaaagctaagtgatcaa
taccaggctctgtttgctgagtacacaagttgtcagaaaaaggtggttggtgatgtagtg
agggtttcaggctcctactcggaggtatttgaaaattttgctgcagttctgtcggagttg
gatgttttacaaagttttgctgatttagcaactagttgcccagttccttatgttaggcca
gacatcacagtgtcggatgaaggagatattgttctactaggtagcagacatccttgtcta
gaggcacaagatggtgttaactttatacccaatgattgcactcttgtgagagggaaaagt
tggtttcagatcatcactgggccaaacatgggaggaaaatccacatttataagacaggtt
ggtgtaaatgtcttgatggcgcaagttggttcctttgtaccttgtgatcaagcaagtgtt
agtgtgagagattgtatttttgctcgtgttggtgctggtgattgccaacttcatggtgta
tcaacttttatgcaagaaatgcttgaaacagcatccatcctaaaaggcgcctctgataaa
tctcttataattattgatgagcttggacgtggaacttctacctatgatggatttggtctt
gcatgggctatctgtgagcatcttatggaagtgactcgagcacctaccttgtttgccacc
catttccatgaattaactgcattagcacataaaaatgatgatgagcaccaacgcgtttca
aatatcggaattgcaaattatcatgtgggtgctcacatagacccatcaagtcggaagtta
actatgctttacaaggttgaacctggtgcatgcgaccaaagttttggcattcatgttgca
gaatttgctaattttccagaagctgttgttgcccttgcaaagagcaaagcagcagagtta
gaagacttctctactacacctaccttttctgatgattcaaaagacgaggttggatcaaag
cgcaagagggtatttagcccagatgacgtcaccagaggagctgctcgggctcggcttttc
cttgaggatttcgctgcattgcctgtggatgagatggataggagcaaaatcgtggagatg
gtcaccaaaatgaaaagtgatttgcagaaagatgcggctgacaatccttggcttcagcag
ttcttctga
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