Sorghum bicolor (sorghum): 8061088
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Entry
8061088 CDS
T01086
Name
(RefSeq) probable polygalacturonase At1g80170
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi00040
Pentose and glucuronate interconversions
sbi01100
Metabolic pathways
Module
sbi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
8061088
Enzymes [BR:
sbi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
8061088
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
PMEI
Pect-lyase_RHGA_epim
Apolipo_F
End_N_terminal
NosD
Motif
Other DBs
NCBI-GeneID:
8061088
NCBI-ProteinID:
XP_021303878
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Position
9:56079218..56083403
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AA seq
733 aa
AA seq
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MRPTSRLRSACFKYPAPAPPASVSGAQQHSVTLALLLLVPTLCSTMARGTVLLLLTAAFA
AALLPDAAESRILLTLHDFGAVGDGVADDTKALADAWTAACTAGDNVILNVPAAGTFQIW
PLTLAGPCRSEIKLLISGDIVAPESPSDWGQGQRSQWLHFHKVQDLKITGGGIIDGRGQQ
WWAQSSLMGAQPAPKAVHFEDCQGISVKGITLQNSQSYHLTFTRSSNVEANYLRVTSPED
SIDTKGIHLVDSFNVHVMDNLISTGDDCVSIVGNCEDVRLRAISCGPGHGISIGTLGVNN
SVDYVEKIKVDTLFISNTKNGVRVRTTRSGGGGFARKVKFESIVMRNVTNPIIVDQGNSD
HLPASSEAVAPAAATAVQVEKINYIDITGTSASKHAVTFSCSDAKPCRHLSLVNVNLTQV
DGTKALSYCRKAFGRSIGTVIPESCLSKEDFVQHVPQRSQDGEEDSDSLMTEVTVHHQVL
SVELCRKAVTELFVIGWVVNKSVRALTRVLTPDMVALDFGTIDAALYTPRNNNRGRSRET
RAADTMESSRIIVASLLLLLLAFAATAEARVVRELIGENACQQTCNQVHFKKMCQSLTKL
PKVTTPRELLLASMRVAAEKAKEAKSRVDEYAARSHEGRPMESILSSCSSGYDNVVQTLE
ETEKIVATQGTQVDLNTKLSDAVTSAGDCDNAFQDFPEMKDPFLAMQRNVWRLVDNVLNI
AVVVKQSGDAHAH
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgcgccccacttcgaggctgcggtctgcgtgcttcaagtaccctgcccctgcgccgccc
gcgtcagtgagtggtgcacagcaacacagtgtcactcttgctctgctgctacttgtgccg
acgctctgttcgacgatggcgcgggggaccgtgctgcttctgctcacggccgccttcgcc
gcggctctcctgccggacgccgccgagtcccgcatcctcctcacgctccacgacttcggc
gccgtcggcgacggcgtcgcggacgacaccaaggccttggccgacgcatggacggcggcg
tgcaccgccggggacaacgtcatcctcaacgtgcccgcagccgggaccttccagatctgg
ccgctcacgctcgccggcccctgcaggagcgagatcaagctgctcatttcaggggacatc
gttgcgccggagagccccagcgactgggggcaggggcagcgcagccagtggctccacttt
cacaaggttcaggacctcaaaatcaccggcgggggcatcatcgacggcagagggcagcag
tggtgggcgcagtcgtcgcttatgggcgcgcagcccgctcccaaggctgttcacttcgag
gactgccaggggattagcgtgaagggcatcaccttgcagaacagccagtcgtaccacctg
acgttcacccggagctccaacgtcgaggcgaattatctgagggtgacctcgccggaggac
agcatcgacaccaagggcattcacctcgttgattcgttcaatgtccacgtcatggataat
ctcatctccacaggcgacgattgtgtttccatagtgggcaactgcgaggatgttcgtcta
agagccatctcatgtggacctggccatggtatcagtattggaaccttaggagtaaacaac
tccgttgattatgtggagaagatcaaagttgacaccttgttcatatcaaacaccaagaac
ggtgtgcgcgtacggaccaccaggagtggcggtggcggcttcgcccgcaaggtgaagttc
gagagcatcgtgatgaggaacgtcaccaaccccatcatcgtcgatcaggggaactccgac
catctgccagcttcatctgaagcagtagcaccggctgcagcgacagcagtgcaggtagag
aagatcaactacattgacatcacgggcacgtcggcgtcgaagcacgcggtgacgttctcg
tgcagcgacgccaagccgtgtaggcacctgtcgctcgtcaacgtgaacctgacccaggtg
gacgggaccaaggcgttgtcctactgccgcaaggcgtttgggaggagcatcggcaccgtc
atcccggagtcctgcctctccaaggaggacttcgtccagcatgtcccgcaacgttctcaa
gatggagaagaagattcagattcactgatgacggaggttactgttcaccatcaggtgttg
tcggttgagctgtgtcgcaaggcggttactgaattgttcgttatcggctgggtggtgaac
aaatcagtcagagccttgacccgggtgctgactcctgacatggttgctttggattttgga
actatagatgccgccctctacactcctcgaaataacaatcgagggcggtcaagagaaacg
agagcggcagacaccatggagagctcgaggatcatcgtcgcctccctcctcctcctcctc
ctggccttcgcagccaccgccgaggcccgcgtcgtccgcgagctgatcggcgagaacgca
tgccagcagacatgcaaccaggtgcacttcaagaagatgtgccagagcttgacgaagctc
ccgaaggtgacgacgccgcgggagctcctgctggcgtcgatgcgcgtcgcggcggagaag
gcgaaggaggccaagagccgtgtggacgagtacgcggcgaggtcccacgagggccggccg
atggagtctatcctcagttcctgcagctccgggtacgacaacgtggtgcagacgctggag
gagacggagaagatcgtcgccacgcagggaacccaggtggacttgaacaccaagctgtcg
gacgccgtcacgagcgccggcgactgcgacaacgccttccaggacttcccggagatgaag
gaccccttcttggccatgcagcggaacgtctggcgcctcgtggacaacgtcctcaacatc
gccgtcgtcgtcaagcagtcgggggacgcgcacgcccactag
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