Sorghum bicolor (sorghum): 8061151
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Entry
8061151 CDS
T01086
Name
(RefSeq) vacuolar protein sorting-associated protein 35B
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi04142
Lysosome biogenesis
sbi04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
8061151
04142 Lysosome biogenesis
8061151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sbi04131
]
8061151
Membrane trafficking [BR:
sbi04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Retromer subcomplex
8061151
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps35
VPS35L_N
Motif
Other DBs
NCBI-GeneID:
8061151
NCBI-ProteinID:
XP_002466271
UniProt:
C5WX27
LinkDB
All DBs
Position
1:complement(3884885..3894336)
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AA seq
803 aa
AA seq
DB search
MAAASAAVRMLPDGGADDEERWLAEGIAGVQQNAFYMHRALDSNNLKDALKYSAQMLSEL
RTSRLSPHKYYELYMRAFDEMKKLEMFFREETRRGSCSVVDLYELVQHAGNVLPRLYLLC
TVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPLRGLFLRSYLSQISRDKLPDIGSEYEGDA
ESINDAVEFVLQNFIEMNKLWVRMQHQGPVREKEKRGKERNELRDLVGKNLHVLSQIEGV
DLDMYKETVLPRILEQVVNCKDDLAQFYLMDCIIQVFPDEYHLQTLETLLSAFPQLQPSV
DIKTVLSQLMDRLSNYAASSPEVLPEFLQVEAFAKFSSAIGKVIEAQPDMPVVGAVTLYV
SLLTFTLRVHPDRLDYVDQVLGACVKKLSGKAKLEDSRATKQIVALLSAPLEKYSNIVTA
LELSNYPRVMDYLDNATTKVMAVVIIQSIMKNTTCISTSDKIESLFDLIKGLIKDMDGAQ
DDELDEEDFKEEQNSVARLIHMLHNDDPEEMLKILCTVQKHILQGGPKRLTFTVPSLVFS
ALKLVRRLQGQDGDVTGEDVPATPKKIFQILHQTIEALSCVPSPELALRLYLQCAEAAND
CDLEPVAYEFFTQAFILYEEEIADSKAQITAIHLIIGTLQRMNIFGVENRDTLTHKTTGY
SAKLLKKPDQCRAVYACSHLFWTDDQDGIMDGERVLLCLKRALRIANAAQQMASATRGSS
GSVTLFIEILNKYLYFFEKGIPQITNTVIQDLIELIRTEKQSDNSVADPSTEAFFSSTLR
YIEFQKQKGGSIGEKYEQIKTSS
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcatcggcggcggtgcggatgctccccgacggcggcgctgacgacgaggag
cggtggctcgccgagggcatcgccggcgtccagcaaaacgccttctacatgcaccgcgcc
ctcgattccaacaacctcaaggacgcactcaagtactcggcgcagatgctctccgaactg
cgcacctcgcgactatcgccgcacaagtactacgagctttacatgagggcgtttgatgag
atgaagaagctggagatgttcttcagggaggagactcgccggggcagctgctctgtggtt
gatctgtatgagcttgtgcagcatgctgggaatgtcttaccgagactctatctcctctgc
acagtgggatctgtgtacatcaaatcgaaagaggctcctgctaaagatgttcttaaagat
cttgttgaaatgtgccgaggcattcaacatcctctccgtggccttttcctgagaagttac
ctttctcaaataagcagagacaaattgcctgatattggttctgagtatgaaggggatgcg
gaaagtattaacgacgcagttgaatttgttcttcagaatttcatagaaatgaacaaactc
tgggtcaggatgcagcatcaggggcctgtccgagaaaaggaaaagcgcgggaaggaaagg
aatgaactgcgtgatctggtaggcaaaaaccttcatgttctaagccagattgagggcgtt
gaccttgatatgtacaaagaaactgttcttccaaggatattagagcaggtggttaattgt
aaagatgaccttgcacagttctacctgatggactgcataatccaagtctttccagacgaa
taccatttacaaacactggaaacattattgagtgcatttccccagcttcagccaagtgtt
gatatcaaaacagtactctctcaacttatggacagattgtctaactatgctgcctcaagt
cctgaagtgttgccagagttcttgcaagttgaagcttttgctaagttcagtagtgctatt
ggaaaggtgatagaagcccaacctgacatgccagttgttggagccgtaactctctatgtg
tcacttctgacttttactctccgtgtacatcctgatcggcttgattatgttgaccaagtg
ctgggtgcatgtgtcaagaaactttcaggcaaagcaaaacttgaagatagcagggcaaca
aagcaaatcgttgcacttcttagtgctcccctggaaaaatatagcaatattgttactgca
ttagaactttcaaactatcctcgggttatggattatcttgataatgctacaaccaaagtg
atggctgtggtaataattcaaagcataatgaaaaacacgacctgcatatctacttctgac
aagattgagtcactattcgatttaattaaggggctgataaaggatatggatggggctcaa
gatgatgagcttgatgaagaagacttcaaggaggaacagaactctgtagcgcgtctaatt
cacatgttgcacaatgatgatcctgaagagatgctgaagatcttatgtactgtacagaag
catatacttcagggaggccccaagcgtttaactttcactgtgccttcgttagtattctct
gctcttaagctggtcaggcgattacaaggtcaagatggagatgtcactggggaggatgtt
cctgcaactccaaagaaaatattccagatattgcatcagactattgaagcactttcttgt
gttccttccccagagttagctctgagactatatttgcagtgtgcagaggctgccaatgac
tgtgatttggaaccagttgcttatgagttctttactcaagcgttcatcttatatgaagaa
gaaattgcggattcaaaggctcagatcactgcaattcacctgataattgggacccttcag
cggatgaatatatttggggtggaaaatagagacaccctcactcacaagacaacagggtac
tcagcaaaacttctcaagaagcctgatcaatgccgagcagtctatgcgtgttcacatctt
ttctggactgatgaccaagatgggataatggatggtgaaagggttctcctttgtttgaag
cgtgccttgagaatcgcaaatgctgctcaacagatggctagcgctacaaggggaagcagt
ggatccgtaaccctatttattgaaattttgaacaagtacttgtacttctttgagaaaggc
attccacagatcacaaatactgtgattcaagatttgattgaattgattagaacagagaag
caaagtgataactctgtagctgatccatctacagaggcattcttttctagcactttgcgg
tacattgaatttcagaagcagaaaggtggaagcataggcgaaaaatatgaacaaataaag
acaagttcatga
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