Sorghum bicolor (sorghum): 8061689
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Entry
8061689 CDS
T01086
Name
(RefSeq) uncharacterized protein LOC8061689
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
8061689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbi03021
]
8061689
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8061689
Transcription machinery [BR:
sbi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
8061689
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
8061689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
8061689
NCBI-ProteinID:
XP_021309753
LinkDB
All DBs
Position
2:complement(19496580..19502521)
Genome browser
AA seq
1035 aa
AA seq
DB search
MRASASAVPMEASASTRRSAAGPDPGGAKKPRLAQPPPSRDPRSYAASNGAASAAEQALV
DELLGQYRTALGELTFNSKPIITNLTIIAGENLQAAKPIAALICANILEVPSDQKLPSLY
LLDSIVKNIGKDYVKHFSARLPEVFCKAYKQVDPSIHHSMRHLFGTWKGVFPLPPLQMIE
KELGFQSSANGSSSAAPSRTDSQSPRPSNSIHVNPKYLEARQHLNQPTKGILGSGAKTSV
IADTGDDIERANRLGTDRSAGRRLEAPDARPNIQRTQRDPFSNSVHEKQAGRDVRGLGFS
KIPQQAVVGTGQVRSKPKGQDAIGGPYYASGVGSSGEQFDRRNNFYASKDVRPSGPVRLD
SALLPTPSINADRVGRPSSNKSWKHSEEEEYVWDDVHSKAAEYGSSNNVIKGEWMSDDGN
AKFASLQRAKWAEAGPVERIDPNTHKLDNLSRFGLAAGQERRISAYMDQEEYLLGKREVE
ARIDREIRSEGQQFPPPRGSSLWVSQEKTLPDIGLDPRMPRFSNQPAERSTIYTGTMSAS
ITSSVPVGLSGHYAGRSSLDTANSVPIRSTEAFGQQHRYWSSSPPQAHSPSTAPFARQGS
PNPAESDFYPSRPLSQLAQNPQEEYSQRALPVLAKDSHEPSLQATQQTQKYPTFQSKSHI
KPSDPLQASFSCENSPSLFRPSHLGEVSLPSDSTPISSDLTSASNLLAGLIKSGFKPNNQ
SDAKLGPSGSLPVASLSLQNTAGENTTLHTQAPDTSRPPLPPGLPPPSSTQSADKAAPLS
SLLSSLVAKGLISSPASDSSNAVLSQPNKASSMNAKVVTASAVPLPALKPSVGKVSSNSD
SSAPTNASLPKAIEIKMGDLIGLEFKPEKLRKYHEHVISSLFDDQSHLCKTCGNRFRLEE
ELSLHTSSCGPREPETIYTGIAPKKWYPSKNFYIDGSHEIEDSTEASDGDLGSTEEVCEF
MVPADERQSICALCGEPFDDIYSFEKGNWMYKDAVFLDYPKEESSCGNNVEPEEHVPIVH
VRCMPRGSNDGMEVN
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgcctccgcctccgcggtccccatggaggcctccgcctccacccgcagatccgcc
gcgggccccgaccccggcggcgccaagaagccgcgcctcgcgcagccgccgccgtcgcgg
gaccccagatcttacgccgcctccaatggcgccgccagcgccgccgagcaagcgctggtc
gacgagctgctcggccagtaccggaccgcgctcggggagctcaccttcaactccaagccc
atcatcaccaacctcaccatcatcgccggcgagaacctccaggccgccaagcccatcgcc
gccctcatctgcgccaacatcctcgaggttccaagtgaccagaaactaccatcactatat
ctacttgacagtattgtaaaaaatattggaaaagattatgttaaacatttctcagcaaga
ttaccagaggtgttctgcaaggcatataaacaagttgatccttctatacatcatagtatg
aggcacctttttggaacatggaaaggagtgtttcccctacctccactccaaatgattgag
aaggaacttggttttcagtcatctgccaatggatcatcgagtgctgcaccatcaaggact
gattctcaatccccgcgcccatccaatagcatacatgtaaatccaaaatatttggaagcg
agacagcacctcaatcaaccaactaagggaatacttggaagtggtgctaagacatctgta
attgctgatacaggcgatgatattgagagggctaacaggctaggtactgatagaagtgca
gggagacgattagaagctcctgatgctagacctaacatacagcgcactcaaagggaccct
tttagcaattctgttcatgaaaaacaggcaggtagagatgtgaggggccttggattctcc
aagattccacagcaggctgttgtgggaactggtcaagttcgctcaaaacccaaaggtcaa
gatgcaattggggggccttattatgcctctggtgttgggtcttctggagaacaatttgac
aggcgcaacaacttttatgcaagcaaggatgttcggccatcaggacctgtacgtttggat
agtgcacttcttccaactccttcaattaatgccgatagagttggtaggccttcatcaaat
aaaagttggaagcactctgaggaagaagaatatgtttgggatgatgtacactctaaagca
gcagaatatggtagtagcaataatgtaataaaaggagaatggatgtctgatgatggcaat
gctaaatttgcaagcctccaaagggctaaatgggcagaggcaggacctgtggaacgtata
gatcccaacacacataaacttgataatctatcaagatttggacttgcagcaggccaagaa
agaagaatttcagcatacatggatcaggaagagtaccttcttggcaagcgtgaggtggaa
gcaagaattgatagggaaattaggtctgaaggacaacagttcccaccacctcgaggttcc
tctctctgggtgtcccaggaaaaaacactcccagacattgggttggaccctaggatgcca
aggttttcaaatcagccagcagagaggtccaccatttatactggcaccatgtcagcaagt
atcacgtcatctgtacctgttgggttgtcaggacactatgctggaaggtcaagcctagat
actgcaaatagtgtgccaataagatcaactgaagcttttgggcagcagcatagatattgg
tcatcttcccctccacaagctcactcaccttctactgcaccctttgcacgtcagggttct
ccaaatcctgctgagtctgatttttatccttccagaccactttctcaattggcccaaaat
cctcaagaagaatatagccaaagagcattgccagtacttgctaaagattctcatgaacct
agtctacaggcaacccagcagacacaaaagtaccctaccttccagtcaaagtcacatatt
aagccatctgatccattgcaggcaagtttttcgtgtgaaaattctccatcgctgttcaga
ccttcccatcttggagaagtctctttaccaagtgattccacccctataagctcagatctg
acaagtgctagtaatttgttggctggtctcataaagagtgggttcaaaccaaataaccag
agtgatgcaaaacttggtccaagtgggtcacttccagtggcttctttatcacttcaaaat
actgctggtgaaaataccactttgcatacacaggcaccagacacttctcgtccaccattg
ccaccaggtctgccaccgccttcatcaacacagagtgcagataaagctgcgccgctctcg
agtcttctcagttccctggttgcaaagggattgatctcttcgccagcctctgattcatcc
aatgctgtcctttcacagccaaacaaagcatcaagcatgaatgctaaagttgtcacagct
tcagctgtgcctttgccggctctgaagccttcagttggtaaggtgtcatctaattctgat
tcatctgccccaacaaacgcttcgttacccaaagctatcgaaattaagatgggtgacctc
attggcctggagttcaagccagagaaacttcgcaagtaccatgagcacgtgattagcagc
ctctttgatgaccaaagccatctgtgtaaaacctgtggtaataggttcaggcttgaagaa
gaactgagcttgcacacatcaagctgtgggccaagggagcctgagactatctatactggt
attgcacctaaaaaatggtaccctagcaagaacttttacattgatggatcacatgaaatt
gaggacagcactgaggcttctgatggagacttaggttctacagaagaagtgtgtgagttt
atggtccctgcagacgagaggcaaagtatctgtgcactatgtggggaaccatttgatgat
atatattcttttgagaaggggaactggatgtacaaggatgcagtgtttttggattacccc
aaggaagaaagcagctgcggaaacaatgttgagcctgaagagcatgtgcccatagtccat
gtaagatgtatgccaagaggctcaaatgatggcatggaggttaactag
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