Sorghum bicolor (sorghum): 8063093
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Entry
8063093 CDS
T01086
Name
(RefSeq) DNA repair helicase XPB1 isoform X2
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03022
Basal transcription factors
sbi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
8063093
09124 Replication and repair
03420 Nucleotide excision repair
8063093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbi03021
]
8063093
03400 DNA repair and recombination proteins [BR:
sbi03400
]
8063093
Enzymes [BR:
sbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
8063093
Transcription machinery [BR:
sbi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
8063093
DNA repair and recombination proteins [BR:
sbi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
8063093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
8063093
NCBI-ProteinID:
XP_002456182
UniProt:
C5XGX0
A0A921UNV7
LinkDB
All DBs
Position
3:60121114..60128044
Genome browser
AA seq
767 aa
AA seq
DB search
MAGGDGDRHRGPKRHKSSAPSKAALVDESAEFDYADDFDDDAHDADMEVKKRDFTKLELK
VDHASRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVS
VGLETSTIISVLSKLSKTKLPREIIDFIHASTANYGKVKLVLKKNRYFVESPFPEVLSNL
LRDEVISRARISPEDSLGAPSFTVSKTSGQIASGHEDLLNGMEIAAATEDKETHSFEIDP
SQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLEMELKPQARPRPYQEKSLSKMFGNGR
ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDEHISRF
TSDNKEKFTGMASVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVHVVPAHMF
RKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVW
CPMTKEFFAEYLKKENSKKKQVLYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALT
AYAMKLRKPMIFGATSHAERTRILYQFKNSPEVNTIFLSKVGDNSIDIPEANVIIQISSH
AGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQ
GYSFKVITSLPPPEEGPNLSFYTLDEQLELLSKVLNAGDDMIGVERLEEDSDGKALLRAR
RSAGSMSAFSGAGGMVYMEYSTGKGKGAPKKHKDPSKRHHLFKKRYA
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atggccggcggcgatggcgatcggcaccgcgggccgaagcggcacaagtcctcggcgccg
tcgaaagcggccctggtggatgagagcgccgagttcgactacgctgatgacttcgacgat
gatgcccacgacgcggatatggaggtgaagaagagggatttcacgaagcttgagttgaag
gtggatcacgcgagccgtccgctctgggcgtgcgccgatggccgcatcttcctcgagacc
ttctcgccgctctacaaacaggcttacgatttcctcatcgccatcgcggagcctgtgtgc
aggccagaatctatgcatgagtacaatctaactccccactcattgtatgctgcggtctca
gtggggcttgagacaagcactatcattagtgtcttgagtaaactgtctaaaaccaagttg
ccccgcgaaataattgatttcatccacgcatcaactgctaactacgggaaagtgaagctt
gtcttgaagaagaatcgatattttgtcgagtccccatttcctgaggtattgagtaacctt
ctgagggatgaagttatatcgagagctaggatatctcctgaggattcccttggtgcacct
tcatttactgttagcaagacatctggccaaattgctagtggacatgaagaccttttaaat
ggaatggaaattgctgctgcaactgaagacaaggaaacacattcttttgagattgatccc
tctcaggttgagaatgtcaagcagcgttgcttgccaaatgcattgaactaccccatgctg
gaggaatatgatttcagaaatgacactgtaaacccagatttggaaatggagctaaagccg
caagcacggcctaggccatatcaagaaaagagcctcagtaagatgtttgggaacggacga
gcaaggtctggaattattgtgctaccttgtggtgctggcaagtccttggttggtgtatct
gcagcctgccgtattaagaagagctgtttatgtttggccacaaatgctgtctccgtagat
caatgggcatttcagttcaagctttggtcaaccataaaagatgagcacattagtcgcttt
acatctgataacaaggagaaatttacaggcatggctagtgtggttgttactacatataac
atggttgcattcggtggtaaaaggtctgaagattcggagaagatcattgaagaaatccga
aacagagagtggggcttgcttctaatggatgaggttcatgttgtccctgcacatatgttc
agaaaagtcatcagcattactaaatctcactgcaagcttggtcttactgctacccttgtg
agagaggacgaacgtattactgatctgaattttctaattggaccaaaactgtatgaagcg
aattggttggatttagtgaaaggtggatttattgcaaatgtgcagtgtgcggaagtatgg
tgtcctatgaccaaagagttttttgctgagtatttgaaaaaggaaaattcaaagaagaag
caggtactgtatgtcatgaatccgaacaagttcagggcttgtgaattcctgattcgattc
catgagcaacaacgcggagacaagataattgtgtttgctgataatctatttgcactaact
gcttatgcaatgaaactacgcaagccaatgatttttggtgccacaagccatgctgagagg
acaagaattctctaccaattcaagaacagtccagaagtcaatacaattttcctttcaaag
gtcggtgataactcgattgatatcccagaagctaatgttatcatacaaatatcgtctcac
gctggttcgagacgtcaagaagctcagcgtctgggacgtattctcagggcaaagggtaag
caccaagataggatggctggaggaaaagaagaatacaatgcttttttctattcccttgta
tcaactgatacacaggaaatgtactactcaacaaaaaggcagcagtttcttattgaccag
ggatatagcttcaaggttatcactagtttgccgccgcctgaagaaggacctaatctgagc
ttttacacacttgatgaacagcttgagcttttgagcaaggtgctgaatgcaggggatgac
atgattggtgttgagcgcttagaagaagattctgatggcaaggctcttctaagagcacga
cgctctgctggatcaatgagcgccttctctggagctggtggaatggtctacatggagtac
agcactggcaagggaaaaggtgctcccaagaaacacaaggacccatcaaagaggcatcat
ctgttcaagaaacgctatgcgtag
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