KEGG   Sorghum bicolor (sorghum): 8063613
Entry
8063613           CDS       T01086                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3 isoform X1
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
sbi  Sorghum bicolor (sorghum)
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:sbi03009]
    8063613
Ribosome biogenesis [BR:sbi03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    8063613
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd EIF3I NBCH_WD40 Beta-prop_TEP1_C Beta-prop_EML Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_IP5PC_F Beta-prop_DCAF4 Beta-prop_SCAP Beta-prop_CAF1B_HIR1 WDR90_beta-prop_4th Beta-prop_VPS8 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_LRRK2 Beta-prop_RIG_2nd Beta-prop_HPS5 PEP5_VPS11_N WDR54
Other DBs
NCBI-GeneID: 8063613
NCBI-ProteinID: XP_002440266
UniProt: C5YVW8
LinkDB
Position
9:57423989..57430551
AA seq 428 aa
MAPPPQPKQLVLAASSADAGVAAWDLRTGAEDIRFRPCASRPRSLASVADRFLASAQALP
AGGNSGTIHFYYWDKPQVAVKSFPAEPIRALIADQEGSYLIGGGSNGNMFLWEVSSGELL
RTWHAHYRAVRCLALYDYLLVSGSEDGSIKVWDLITVLDEQSRLEAQTPYMYSFSQHALP
VTDIACFLGAIAVSSSEDRTCKIWSLSEGRMLRSISFPTSIGSVALDPRSHIFYAGGRDG
KIYVTAMGVDLSFHGSDESSILGTLDDHSKAVTSLASSTDGLLLVSGFEDGNVRVWDTRC
QQVTRKFKHSQGPVTNVLIVTPQRVNLPPLQPLRKVCSANGEAEWRAVVLPRPENDVPIP
GNKTSIFMERYLDELQKHGGSSRLFDFELNAQNGTPNQQGTEWRDRYLELQDLFVHEVLH
QMPSSRNP
NT seq 1287 nt   +upstreamnt  +downstreamnt
atggcgccgccgccacaaccaaagcagctggtgctcgccgcgtcatctgcggacgcgggc
gtggccgcctgggacctccgcaccggcgcggaggacatccgcttccgcccctgcgcctcc
cgccctcggtcgctcgcctcggtcgccgaccgcttcctcgcctccgctcaggctcttcca
gctggcggcaactccgggaccatccacttctactactgggacaagccgcaagtggccgtc
aagagctttcctgctgagccgatccgagcacttatcgccgatcaggaggggagctacctc
atcggcggtggcagcaatggcaatatgttcctttgggaggtgtctagtggagagcttctc
cgcacatggcatgcgcactatcgtgctgttaggtgccttgcgctgtatgactatttgctt
gtctcagggtcagaggatgggagtatcaaagtttgggatctcatcacggtgcttgatgag
cagtcaaggctggaggcccagacaccatacatgtatagtttcagtcagcatgcactgcct
gtaactgatattgcttgttttcttggagcaattgctgtatcttcttcagaggatcgaaca
tgcaaaatttggagtttatctgagggtaggatgctaagaagcatttcatttcctactagc
attggttctgtagcactagacccaagaagtcatattttctatgctggtggtagagatgga
aagatatatgttactgctatgggtgttgatctcagttttcatggtagtgatgagtcatct
attttgggcacattggatgaccacagcaaggcagtaacaagcttagcatcaagcacagat
ggacttctacttgtctctggatttgaggatggtaatgttcgggtctgggatactagatgt
cagcaggtgacccgaaaattcaaacactcccaaggtccagtaaccaatgttctgatagta
acgccacaacgagtaaatctgccaccactacaaccattacgcaaagtttgctcagcaaat
ggggaggctgaatggcgggcagtagttcttcctcggcctgaaaatgatgttccaattcct
ggaaataaaacctccatctttatggagcgctacttggatgagcttcagaagcatggtggt
tcttccaggttatttgatttcgagctgaatgctcagaatggcactccaaaccaacaggga
acagaatggagagatagatacttggagttgcaggatctctttgtacatgaggtcctccat
cagatgccatcctcgaggaacccatga

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