Sorghum bicolor (sorghum): 8063686
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Entry
8063686 CDS
T01086
Name
(RefSeq) splicing factor 3B subunit 3 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8063686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbi03021
]
8063686
03041 Spliceosome [BR:
sbi03041
]
8063686
03036 Chromosome and associated proteins [BR:
sbi03036
]
8063686
Transcription machinery [BR:
sbi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
8063686
Spliceosome [BR:
sbi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
8063686
Complex B
8063686
Complex C
U2 SnRNP specific factors
8063686
Chromosome and associated proteins [BR:
sbi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
8063686
TFTC complex
8063686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
8063686
NCBI-ProteinID:
XP_002461656
LinkDB
All DBs
Position
2:complement(7224075..7241069)
Genome browser
AA seq
1361 aa
AA seq
DB search
MKPSSTAGDAASASTAEAAAAASSSSSGPSTSASTSTADATHYIAKRVLRGSAVLHVAEG
CFRSPDSADVVLAKETSLELVAVGDDGVLQSICEQDMFGIIKDIGVLQWHSRHVGLIPQI
EHKDLLVVLSDSGKLSLLYFCSEMHRFFAIANIELSKPGNLRHHLGRILAIDRESNFVAV
SSYEDKFALIHVSVSQSGSGRGIISEKKYFYPPENEEDSRIISSSRTSIRGTIWTMRFIS
IPQDEEYYPVLAMIINRKGSDVNDLSLFGYDTSSCVVDHISSYSEIGPLALDISEIPEMF
GFALLLRVGDALLLDLRNPRNVCCIRRISLTTSLIGERITVEDSCPGLDVDDDVAACALL
ELRDSANNIMKDDGYMDIDGVDSRGNVKPRIICSWSWEPPEPVRRGWARLLFCLDDGEFH
ILEFTLDVEGVKLYTFEYIDRSLPCRPLFWMKNRMIIGFVEMGDGMIFKLGDRRLFHKST
IQNVAPILDLAIADYHGEKQDQMFACCGMSPEGSLRVLRNGVNVDRLLKTEAIYQGVTGL
WTLRMKTTDAYHSFLVLSFVEETRILSVGLSFNDISDAVGFQPDVCTLACGLVADGLLVQ
IYSKGVKVCLPTVYAHPEGAPLTSPICTDWYPAITISVGAVGHNIVVVATSNPCCLYVLG
VRSSTSYRYELYATHHVQLQYEVSCISIPQEDWRHDNVALSCGEGDDICNNSPPKANVRK
FAVIGTHRPSVELISLEPGEALRVLTIGTISVNNAFGAPMSGCIPENVRFVAAERFYILA
GLRNGMLLRFESEASDYLPGFFYKDSSIPSINTFLQLISIRRIGITPVLLVPIHDSANAD
IIVLSDRPWLLHAARHSLAYSSISFLSASHVTPVSSVDCPNGLLFVAESCLHLVELVHGK
RLNAQKFSIGGTPRKVLYHNESRTLLVLRTGLSGASSSSDIVQVDPQNGVLLSRYKCEPG
ETAKCMQIAKIGNDQVLIVGTNKSAGRPMMSNGEAESSIKGRLIVLSLEAVESPRESSSF
IPASSFNPSSSHSGSPFHEIVGYTTEEFSSNSLCSSPDEFCCNQIQAEMAGQLRSLTHAI
LNGAVLAVCPYLDRYVLAAAGNTIYVFGFTNENPHRMKKCAVGRTRFTITCLKTFASRIA
VGDCRDGVLFYSYNESHRKLELIYSDPAHRLVGDIALLNCETAVVSDRRGSISVLSCTRL
EVSESPQKNLAVNCSFYMGETAMSIQKAAFRYRLPFDDDTDPVLETVYDCIVASTMLGSL
FVMIPLTSEEHQLLQDVQERLSVHPLTAPVLGNDHAEFRQRGTPSVAPPILDGDMLVQFL
ELTGEQQQAILAHTLPGKGPQKSLSVFEVLRTLERVHYALN
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgaagccctcctccaccgccggcgacgccgcctccgcgtcgacggcggaggcggcggcg
gcggcgtcctcctcctcgtcggggccctccacctccgcgtccacgtccaccgcggacgcc
acccactacatcgccaagcgggtgctccggggaagcgccgtgctccacgtcgccgagggc
tgcttccgctcgcccgactccgccgacgtcgtcctcgccaaggaaacttcactggagttg
gttgctgttggtgatgatggtgttttgcagtcaatatgtgaacaagacatgtttgggatt
ataaaagatatcggtgtattgcaatggcactctagacatgttggtttaattccacagata
gaacacaaagatcttctggttgtcctttcagattctggaaagctttcccttctttacttt
tgttctgagatgcataggttctttgcaattgccaatatcgagttatccaaaccaggaaat
ctgaggcatcatctgggaagaattttagctatagatcgagaatctaattttgttgctgtc
agttcatatgaggataagtttgcccttatacatgtttctgtttctcagagtggttctggc
aggggtatcatttctgagaagaaatatttttatccaccagaaaacgaagaggattcaagg
atcataagttcgtctaggaccagcatccgtggtacaatttggacgatgcgcttcatatct
atcccccaagatgaagaatactatccagttctggcaatgataattaacaggaaaggctct
gatgtgaatgacttgtcgttatttggatatgacaccagcagctgtgttgtcgaccacatc
tctagttattcagaaattggaccgttggcacttgacatatcagaaattcctgaaatgttt
ggctttgcacttctgttgcgtgttggtgatgctttattgttggatcttagaaacccaagg
aacgtctgctgtatccgaagaatcagcttgacgactagcctcattggagagagaatcact
gttgaagattcttgtccaggattagatgttgatgatgatgtggctgcttgtgctttgcta
gaattgagagattctgctaataacataatgaaggatgatggttatatggacattgatggt
gttgacagcagaggtaatgtgaaaccaaggatcatttgctcgtggagctgggagccacct
gaacctgtcaggcgaggatgggcaaggcttctattttgtttggatgatggagaatttcat
attttggaatttactttggatgttgaaggggtgaagctgtatacatttgaatatattgat
aggagtttgccttgcagacctcttttttggatgaaaaatagaatgataatagggtttgta
gagatgggagatggcatgatttttaaacttggcgatcgtaggttgtttcataaaagcaca
attcagaatgtagcaccaatattggatcttgcaattgctgattaccatggtgagaaacag
gatcagatgtttgcatgttgtggaatgtcccctgagggctctcttcgagttttacggaat
ggtgtcaatgtggacagacttctgaaaactgaagctatttatcaaggtgtcactggtttg
tggactttgagaatgaagacaactgatgcctaccattcttttcttgtgctatcatttgtg
gaggaaaccagaatactgtcagtaggactaagttttaatgatatcagtgatgctgtggga
ttccagcctgatgtttgcactttagcatgtggtttggtggctgatggtctgcttgttcaa
atttacagtaaaggtgttaaggtctgtttgcctacagtatacgctcaccctgaaggtgcc
cctttaacttctccaatttgcactgactggtatcctgctatcactatcagtgttggtgct
gtaggacataatattgttgttgttgctacatcaaatccttgttgcttatatgtccttggt
gttagatcatcaacttcttaccggtacgagttgtatgcgacacatcatgtgcaattgcag
tatgaagtatcatgcatatctatcccccaagaggattggagacatgataatgtagccctc
agctgtggagagggtgatgatatttgtaacaattcccctcctaaagctaatgttcgcaag
tttgctgttattggaactcatagaccttcagtggaactcatctccttggaacctggagaa
gcattaagggtattgactattggtactatatcagtgaataatgcgtttggtgcgccaatg
agtggttgtatacctgaaaatgtcaggtttgttgcggctgagaggttctacattcttgca
ggcttgagaaatggaatgctactcagatttgagtcagaagcaagtgattatctccctggt
tttttctacaaggactcttctattccttctatcaatacattccttcagttgatttcgata
cggcgtattggaattactcctgtactgttagtgccaatacatgattcagcaaatgctgac
atcattgttctcagtgatagaccttggctattacatgcagcaagacatagcctggcatat
tcatccatttcatttctttctgcttctcatgtcacgcctgtttcatctgttgattgcccc
aatggtctactgtttgttgctgagagctgtttgcatttggttgaattggttcatgggaag
cgattgaatgcgcagaagttttcaattggagggactccaaggaaagtgctataccataat
gaaagcagaacactgttggtactaagaactgggctaagtggtgcatcgtcttcttcagat
attgtccaagtagatccacaaaatggggtactactttcgagatataaatgtgaacctggt
gaaacagcaaaatgcatgcaaattgcaaaaataggaaatgatcaagttttaattgttggg
accaataagtctgctggacggccaatgatgtcaaatggtgaagcagaaagcagcatcaag
ggacgcctgattgttctaagcttggaggcagttgaaagtcctcgtgagagcagttcgttt
attccagcttctagttttaatccctcttcatcacattctggttctcctttccatgagatt
gttggatatacaactgaggaattttctagtaacagcctgtgcagcagtcctgatgagttt
tgctgcaaccagatccaagctgaaatggcaggacaattgagatcattgactcatgctata
ttgaatggcgcagttcttgctgtgtgtccctatctagatcgttatgtgttggcagctgct
ggtaatacgatttatgtatttggtttcacaaatgaaaatccccacaggatgaaaaagtgt
gctgttggtaggacacgatttacaataacttgtctgaagacatttgcatcacgaattgct
gttggtgattgtcgtgatggtgttctcttctattcttataatgagagtcaccggaagttg
gaattgatctattctgatcctgctcatagattggtgggtgatattgctcttttaaattgc
gaaactgctgtggtatcagatcgacgtgggagcatatctgtattatcatgcacaagattg
gaagtttcagaaagtccacagaagaacttagctgtgaattgttcattttatatgggtgaa
acagctatgagcattcagaaggctgcattcaggtatcggcttccatttgacgatgatact
gacccggtgcttgagacagtttacgactgtattgtggctagtaccatgctggggagtctc
tttgttatgattccacttacaagtgaggagcatcagcttttgcaagatgtccaagaaaga
ctctcagtacacccattaactgcaccagtcttgggaaatgatcatgcagaattccgtcag
cgtggtaccccttcagtagcgcctcccattctcgacggtgatatgcttgtgcaattcttg
gagctcactggtgaacaacagcaagccatccttgctcatactttgccagggaaggggcca
cagaagtccctctcggttttcgaggttttgagaacattagagcgtgtccattatgctctt
aactga
DBGET
integrated database retrieval system
