Sorghum bicolor (sorghum): 8064256
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Entry
8064256 CDS
T01086
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8064256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbi03041
]
8064256
Enzymes [BR:
sbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
8064256
Spliceosome [BR:
sbi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
8064256
Complex C
U4/U6.U5 tri-SnRNP related factors
8064256
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
PWI
AAA_30
T2SSE
SRP54
nSTAND3
Flavi_DEAD
AAA_16
TsaE
ABC_tran
Motif
Other DBs
NCBI-GeneID:
8064256
NCBI-ProteinID:
XP_021314822
LinkDB
All DBs
Position
4:complement(52668471..52683858)
Genome browser
AA seq
1046 aa
AA seq
DB search
MASDGQLREWVSDKLMSLLGYSKNVVVQYVIRLAKECSSTGDLVSKLVEFGFTSSAETRT
FASDVYAKVPRRASGISNYQKQEREAAKLVQKQSTYKLLADEDDNTDNQTPTSQKTSTNP
SSKSRKHFRRKADQDSGDDEIVAKDSGRNVRRRTEEEDEEGGDSSSDDEKERIRDQQEKA
QLERNMRERDAANTRKLMERQLSKEEQEELTRRSQAMDKNDTSDLRKFSRQAYLQKRRDK
KIEEIRDEILDHQYIFQDVKLTEAEEKELSYKMKLYGLVKEHVETPDDVGEYKMPEAYDM
GENVNQEKRFSVAMQRYKDPEAKDKMNPFAEQEAWEEHQIGKSKLRFGSKDKKTSSDEYQ
YVFEDTIDFVKSSVIEGTQPEDDSDKEDVEAKDILKRELQDERKTLPIFKFRDELLKAVE
EYQVIVIVGETGSGKTTQIPQYLHEAGYTAKGKVACTQPRRVAAMSVAARVSQEMGVKLG
HEVGYSIRFEDCTSDKTIIKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFG
LVKDISRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEIHYTKAPEADYIDA
AIVTVLQIHVTQPPGDILVFLTGQEEIETVDEILKHRTRGLGTKISELIICPIYANLPTE
LQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKIKSYNPRTGMESLLINPI
SKASANQRAGRSGRTGPGKCFRLYTSYNYMHDLEDNTVPEIQRTNLANVVLTLKSLGIHD
LVNFDFMDPPPSEALLRALEQLFALSALNSRGELTKTGRRMAEFPLDPMLSKMIVASEKY
KCSDEVISIASMLSIGNSIFYRPKDKQVHADNARLNFHTGNVGDHIALLNVYSSWKETDY
STQWCYENYIQVRSMKRARDIRDQLEGLMERVEIEICSNASDLDAIKKAITSGFFHHSAR
LQRDGTYKTVKNPQTVHIHPSSGLAEIRPRWVVYHELVLTTKEFMRQVTELKPEWLVEIA
PHYYQLKDVEDSGTKKLPKGQGRAAL
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgatgggcagctcagggagtgggtctcggacaagctcatgagcctcttgggc
tactccaagaacgttgtcgtccagtacgtcatcaggcttgcgaaggagtgctcttctacc
ggtgacctcgtgagcaagctcgtcgagttcgggttcacctcgtctgcggagacacgtacc
tttgcgtcggatgtctacgccaaggttccccgtagggccagcggcatcagtaattaccaa
aagcaggagagggaggcggcaaagcttgtccagaaacagagcacttacaagctgttggcc
gacgaggatgacaatactgacaaccagacaccaacaagtcaaaagacctcaacaaatcca
tcatctaagagtcgaaagcatttcaggaggaaagcagatcaagacagtggtgatgatgaa
atagtggcaaaagattctggaaggaatgtccgtcggcgaacagaagaggaggatgaagaa
ggtggcgacagcagctctgatgacgagaaagaaaggattagagatcagcaggaaaaggcc
cagctagaaaggaacatgagagaaagagatgcagctaacacaaggaagttgatggagcga
caattatctaaggaagaacaagaagagcttactagaagatctcaagcaatggacaagaat
gacacatctgatctgagaaaattctcaaggcaagcatacctgcaaaagcgtcgggacaaa
aaaattgaggaaattcgtgatgaaattctggaccaccagtacatttttcaggatgtgaaa
ctaacagaggcagaagaaaaggagttgagttacaagatgaagttatatggtcttgtcaaa
gaacatgttgagactcctgatgatgttggtgagtacaaaatgcctgaagcttatgacatg
ggtgaaaatgtcaatcaagagaagagattctccgtggccatgcagcggtacaaagatcct
gaggccaaagataaaatgaacccttttgctgaacaggaagcatgggaagaacaccaaata
ggaaaatcgaaactgcgatttggatccaaagataagaagacgtcttcagatgagtatcag
tatgtatttgaagatacgattgattttgttaaatcatcagtcatagaaggaacccagcct
gaagacgattcagataaagaggacgttgaagcaaaagatattttgaaaagggagctccag
gatgagcgaaagacacttccaattttcaaatttagggatgaactgcttaaagctgtagaa
gagtatcaggttattgtcatagtgggtgagactgggtccggtaaaacaacacaaatacct
cagtatcttcatgaggctgggtatactgcgaaaggaaaggttgcatgtactcaacctcgt
cgagtggctgccatgagtgttgcagcaagagtatctcaagaaatgggtgttaaacttgga
catgaggttggttactctataagatttgaggattgcacttcagataaaacaattattaag
tacatgactgatggaatgcttctgagggagttccttggtgaaccagatttggctagctat
agtgttgtcatggttgatgaagctcacgagcgtaccctctccactgatatcttatttggt
ctggtgaaggatatttctcgttttcgaccagacctgaagttgctcatttctagtgccacc
cttgatgcagaaaaatttagtgactacttcgattcagctcctattttcaagatacctggg
aggcgatacccggttgaaattcattatacaaaagccccagaggctgattacatagatgca
gcaattgtcactgttttacagatacatgtgacacaaccccctggagatatcctggtgttt
ctcacaggtcaggaggaaattgaaacagttgatgaaatccttaaacacagaacaaggggc
ttaggcaccaaaatatcagaattaattatatgtcctatttatgcaaatctacctaccgag
ctgcaagctaagatatttgagccaactcccgagggtgcccgtaaggtggttctggccact
aatatagcagagacttcattgaccattgatggtataaaatatgttattgatccaggcttt
tgtaagatcaaatcatacaatccccgcactggaatggaatctctacttattaatcctatc
tcaaaagcttcagcaaaccagagggcaggaagatctggtcgcactggacctggaaaatgc
ttccgtctttacacgagttataactacatgcacgacctagaagataatactgttccggag
atccaacgaaccaatcttgcgaatgttgtgcttacactcaagagtcttggtattcatgac
ttggttaactttgacttcatggatccacctccatcagaagccctattaagagctctggaa
caactttttgctctcagtgcactcaacagtcgtggagagttaaccaagactggaagaaga
atggcagaatttccactggatcctatgttgtcaaagatgattgttgcttcagagaagtac
aagtgttctgacgaggtcatctccattgcatccatgttgtcaattggcaattctatattt
tatcgtccgaaggacaaacaagttcacgcagataatgcaaggttgaacttccacactggc
aatgttggggaccatatagcactactaaatgtgtatagttcttggaaagaaacagactat
tcaactcaatggtgttatgaaaactatatacaggtgcgcagcatgaagagggcaagagat
attcgggatcaactagaggggcttatggaaagagttgagattgagatttgctcaaatgcc
agtgatttagatgctattaaaaaagctataacatcaggtttcttccatcattctgcacgg
ttgcagagggatggtacatataagactgtcaagaaccctcagaccgtacatatccatcct
agttcaggactagcggagatacgtccgcggtgggtagtataccacgaattagttctcaca
acaaaagagtttatgcgccaggtgacggaactgaagcctgaatggctggtagagatagca
ccacattattaccaactaaaggacgtggaagactctggaacaaagaagctaccaaagggc
caaggacgagctgcattgtag
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integrated database retrieval system
