Sorghum bicolor (sorghum): 8064553
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Entry
8064553 CDS
T01086
Name
(RefSeq) endoribonuclease Dicer homolog 2a
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
sbi
Sorghum bicolor (sorghum)
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sbi03036
]
8064553
Chromosome and associated proteins [BR:
sbi03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
8064553
microRNA pathway
RISC loading complex
8064553
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
DEAD
Dicer_dimer
Helicase_C
ResIII
PAZ
dsrm
Cas3-like_C_2
Dicer_dsRBD
DUF6976
AAA_22
Motif
Other DBs
NCBI-GeneID:
8064553
NCBI-ProteinID:
XP_021318447
LinkDB
All DBs
Position
1:15260656..15277458
Genome browser
AA seq
1386 aa
AA seq
DB search
MAEEDPLPPCDPQTQARWYQLEALERALAGNTLVFLETGAGKTLIAVLLLRRFANRIRSS
PPPCFAVFLVPTVVLVSQQARVVRAHTDLTVAEFFGEMGVDFWNADKWRDMVDGAEVLVM
TPQILLDNLRHSFFRLRDIPLLIFDECHHATGNSPYACIFKEFYHPQLNSRPSDPIPRIF
GMTASLINSKDLARDKYSMKISELENLMNAKVYTVASESELLQYIPFATTRIIEYDDYIV
KSELYSHTIRCLDKLEAKHLEILKGKLHGSYLENAEKRIKKLNAMFLYCISDLGVWLAAK
AAEILQSNKESCVSFWGEKLDDEVEGFIRNYIGDVNNELSEIILKMTKRGLQRHIGEDFD
ADLQDGLLKSKVYFLIKSLLEYRHVQDLRCIVFVKRVITSIVLEALLSTINQMSGWSVRY
MAGKNFGLQYQSRNTHVEIVDSFRSGKVHLIIATQILEEGLDVPSCNLIIRFDQAATVCS
FIQSRGRARMQNSHYVLLIRRGDANALSKTEEFLESGQIMREESQRLESTFYQPLPNTLC
NEEFYGVQSTGAIVTLNSSVQLIYFFCSKLPSDEYFNPLPRFNIDKALGTCTLHLPMSSP
VQTIYAEGEISIIKRVVCLNACRELHAVGALTDYLLPESSVPCEDEPDIVVDKYKEEQPD
YFPEQLMDNWLSFCHRGLYYCYKISLEGCSETTTPAEIVLAVKCDLGSDFISTTFKLWGV
QDYLSFTIRYVGVIHLNQEQVIVARRFQTRILSLLISKDLSEDGNSIKSLLEMQVSSGAV
YLLLPVVSGKIDWCSIKFSSSEMHEDTIMDSRHSHSCKDTGLLQTKGGPFCPCMLQNSIV
STPHNGMLYAVSGLLLDLNANSPMRESVLSYKTHFKESHGLDLKCEDQPLLRASKLVKVR
NILHERNYKKEKESTNVFELPPELCIVVMAPVSANTLRCFTFIPSIMYRIQCMLLSVNLK
TQLGPSMKQFDIPALKVLEALTAKKCKEEFSQESLETLGDSFLKYITTQHLFSKYKHQHE
GMLTKMKKNLISNAALCQLACSNNLVGYIRSETFNPETWIIPGVGNDSCGRSLRKLKSKR
IADSVEALIGAYLSAAGEQAAYLFLKSLGMDIEFHKMPVERKITINAENFINLRSLELML
DYNFSDPSLLLEALTHGSYQIAGTTACYQRLEFLGDAVLDHIFTDYFYHQYPECTPELLT
DLRSASVNNSCYAHAAVKAGLHKHILHSSSALHKKMADYLDKFEQSFSGPSHGWEAGICL
PKVLGDVIESIAGAIYIDTKNDKKVVWRKMKRLLEPLATPDTLEIDPVKELHEFCDPKTC
SIKYTVAREDRVTSVAVEVQTKGTTYKATRTGLTKRDAKKLAAKSVLKDMKAANSTQHFA
NGISCT
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagaagatccgctgccgccctgcgacccgcagacgcaggcgagatggtaccag
ctcgaggcgctggagcgcgcgctggccgggaacacgctggtgttcctcgagacgggcgcc
gggaagacgctcatcgcggtgctcctcctccgccgcttcgcgaaccgcatccgctcgtcc
ccgccgccctgcttcgccgtcttcctcgtccccaccgtcgtgctcgtgtcccagcaggcg
cgcgtcgtccgggcgcacacggacctcaccgtcgccgagttcttcggcgagatgggcgtc
gacttctggaacgcggacaagtggcgcgacatggtcgacggggccgaggtgctcgtcatg
acgccgcagatcctcctcgacaacctccgccacagcttcttcaggctccgggacatcccg
ctcctcatcttcgacgagtgccaccacgccaccgggaattcgccctacgcctgcattttt
aaggagttttatcatccccaactgaattctaggccatcagatcctattccaaggatattt
gggatgacagcttccctaattaattcgaaagatcttgcgcgtgacaaatattcaatgaaa
atatctgagctcgagaacctcatgaatgcgaaggtgtacactgttgccagcgaatcagag
ctattgcaatacattccatttgcgactacaaggataatcgagtatgatgattatatcgta
aagtctgagttatatagccatactatccgttgcttggacaaattggaagcgaagcattta
gaaatcctgaagggcaaactgcatggttcatatttggaaaatgcagagaaaaggattaaa
aaattaaatgcaatgttcttatattgcatatctgatcttggagtatggctggcagcaaag
gctgctgagattctacaatcaaacaaggaaagctgcgtatccttttggggtgaaaaactg
gatgacgaagttgagggattcattagaaactatattggtgacgtaaataatgaactgtca
gaaattatattgaagatgacaaagaggggtttacaacggcatattggtgaggactttgat
gcggatttgcaagatgggttattgaaatccaaagtttattttcttatcaaatctcttttg
gagtataggcatgtgcaagatttgagatgcattgtttttgttaagagagttattacaagc
attgtgttggaggctcttctgtcaactattaatcaaatgtctggatggagtgtaagatac
atggcagggaaaaattttggtttgcaatatcagagtaggaatacgcatgtggaaattgtt
gattcatttcgaagtggaaaggtgcacctaattattgccacacaaattttggaggaggga
ctggatgtgcccagttgtaacttgataatccgctttgatcaggcagcaactgtatgcagc
tttatacaatcacggggtcgagctaggatgcaaaattctcactatgttttacttattaga
aggggggacgccaatgctctttctaagacagaggagtttctcgaaagtggacaaatcatg
cgtgaagaatctcagagattggaatctactttttatcagcctcttccaaacaccctatgc
aatgaagaattttatggtgttcaatctactggagcaattgttactctgaactctagtgtt
cagttgatttactttttctgctcaaagctaccttccgatgagtattttaatcctctacca
agattcaatattgacaaggcattaggtacatgtacgctgcatcttccaatgagcagtccc
gtacaaacaatttatgctgaaggagaaatttctatcatcaagagggttgtttgtcttaac
gcctgtcgtgaattacatgctgttggtgctctcacagattatctcttacccgaatcgagt
gttccatgcgaagatgaacctgacattgttgtggacaaatacaaggaggagcaacctgac
tactttccagaacaattaatggataattggttgtctttttgtcatcgtggcttatattat
tgctacaagatctcactggaaggttgttctgaaacaactactccagctgagatagtatta
gctgtaaagtgtgatttgggatctgacttcatttcaaccacattcaaattgtggggtgtg
caagactatttgagttttaccataagatatgttggtgtgattcatctaaatcaagaacag
gtaattgtcgccagaagatttcagacaagaattctttctttgcttattagtaaggacctt
tccgaagacggcaattctattaagagtttacttgaaatgcaagtatcttctggagctgtg
tatctacttctgcctgtagtttctggaaaaattgattggtgcagcatcaaattctcatcc
tcagaaatgcatgaagatactatcatggatagtagacacagccattcttgtaaagatact
ggtttgctgcagacaaaaggtggccctttctgcccatgcatgcttcaaaattctattgtc
tccaccccacataatggcatgctctatgctgtttctgggcttcttcttgacttgaatgct
aattcgcctatgcgtgagagtgttcttagctacaaaacccattttaaagaaagtcatggc
cttgacttaaaatgtgaagatcaacctctcttgcgtgccagtaaacttgtgaaagtgcgg
aacatcctccatgagcgcaactataaaaaagaaaaagaaagtacaaatgtgtttgaattg
ccacccgagctctgcatagttgtcatggcgccagtgtcagcaaataccctgcgctgcttc
acatttattccttctataatgtatcgtatccaatgtatgcttctttctgtgaatttgaaa
acgcaattgggtccaagcatgaagcagttcgatattccagcactaaaggttctggaagca
ctaacagcaaagaaatgcaaagaagaattttcgcaggaatcattagaaacacttggagat
tctttcctcaagtatattacaactcagcacctctttagcaaatacaaacatcagcatgaa
ggcatgctaaccaagatgaagaaaaacttgatctcgaatgctgctttatgccagctggcc
tgcagtaacaatcttgtgggatacattcgaagcgaaactttcaaccctgaaacgtggatt
attccaggggttggcaatgactcatgtggtaggagtctgaggaagcttaaaagtaagagg
atcgcagattcagttgaagccttaattggggcatatcttagtgctgctggtgagcaggca
gcgtatcttttcttaaaatctttaggaatggatatagagtttcacaaaatgccagttgaa
aggaaaattacaatcaatgcggagaacttcattaaccttagaagtttggagctaatgctt
gactataatttcagtgatccatcattgttgttggaagcactgacacatggttcatatcag
attgccggcactactgcatgttatcagcggctcgagtttcttggagatgctgtattagat
catatttttaccgattatttctaccatcagtaccctgaatgcactccagaactgttgaca
gatctgagatctgcttctgtgaacaatagctgctatgctcatgcagcagttaaagcagga
ttacataaacatattctacattcatcatctgcactgcacaaaaagatggctgactacctc
gacaagtttgagcagtcattttcaggtccatcacatggttgggaagctggcatctgttta
ccaaaggttctaggtgacgtaattgagtctatcgctggtgcaatctacattgataccaag
aacgacaaaaaggttgtttggagaaagatgaaacggctactagaacctcttgccaccccc
gacactcttgaaattgatcctgtcaaagagctgcatgaattctgtgatcctaaaacgtgc
agtatcaagtacacagtagctcgtgaggaccgggtaacctcggtggccgtagaagtacag
accaaagggactacatacaaggccactcggacaggcctcaccaagcgtgacgccaaaaag
ttagcagccaaatccgtgctcaaagatatgaaggccgcgaatagcacgcagcattttgca
aatggtatcagctgcacttaa
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