Sorghum bicolor (sorghum): 8065039
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Entry
8065039 CDS
T01086
Name
(RefSeq) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi00040
Pentose and glucuronate interconversions
sbi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
8065039
Enzymes [BR:
sbi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
8065039
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
8065039
NCBI-ProteinID:
XP_002437204
UniProt:
A0A921Q3Y7
C5Z561
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All DBs
Position
10:51434295..51436378
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AA seq
454 aa
AA seq
DB search
MEEEGFRWSRAGSFVLFYLVLFLSAAVSSEANIGDFDDYWRQRKLMADAAAEATYKHDPL
EVTNQLNRAVHRSVEKEDMSTRRRAMMGHKKGKLNNGPCEATNPIDRCWRCRQDWATDRK
RLARCAQGFGRNTTGGLAGKFYVVTDGTDDDVVNPRPGTLRWAVIQIEPLWITFARTMII
TLKEELIIQGDKTIDGRGAQVRIANGAQLTVQFANNVIIHNVHINDIMSSNKNGGNIRDS
PDHFGWRTVSDGDGITLFGSTNVWLDHLSLSNCQDGLIDVIVKSTGVTISNCHMTNHNDV
MLFSSSDKHPEDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSKA
PTIISQGNRYIAPPNLAAKLVTKHHDAPESEWKNWVWHSENDLFMEGANFTVSGGQKINR
NFHKKDLIKPKNGSYVTRLTRYAGALACRPGKPC
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggaggggttccgatggagcagagcgggctctttcgtcctgttctacttggtc
ttgttcctgtccgcggccgtgtcgtcggaggccaacatcggcgacttcgacgactactgg
cggcagcgcaagctcatggccgacgccgcggcagaggccacgtacaagcatgacccgctc
gaggtcaccaaccaactcaaccgcgcagtgcacagatccgtcgagaaggaggacatgagc
acgcggcggcgggcgatgatggggcacaagaagggtaagctcaacaacgggccgtgcgag
gcgacgaacccgatcgaccgttgctggcggtgccggcaggactgggcgacggaccggaag
cggctggctcggtgcgcccagggcttcggtcgcaacaccaccggcggtctggccggcaag
ttctacgtggtgacggacggcaccgacgacgacgtggtgaaccctcgccccggcacgctc
cggtgggccgtcatccagatcgagccgctgtggatcaccttcgccaggacgatgatcatc
acgctcaaggaggagctcatcatccagggcgacaagaccatcgacggccggggcgcgcag
gtgcggatcgccaacggcgcgcagctgacggtgcagttcgccaacaacgtcatcatccac
aacgtgcacatcaacgacatcatgtcctccaacaagaacggcggcaacatccgggactcg
ccggaccacttcggctggcgcaccgtctccgacggcgacggcatcaccctcttcggctcc
accaacgtgtggctcgaccacctctccctctccaactgccaggacggcctcatcgacgtc
atcgtcaagtccacgggcgtcaccatctccaactgccacatgaccaaccacaacgacgtc
atgctcttcagctccagcgacaagcaccccgaggaccagatcatgcagatcaccgtcgcc
ttcaaccacttcggcagaggcctcgtgcagaggatgccgaggtgccgctgggggttcttc
cacgtcgtcaacaacgactacacgcactggctcatgtacgccatcggcggcagcaaggcg
ccgaccatcatcagccaggggaaccgctacatcgcgccgcccaacctggcggcgaagctg
gtcacaaagcaccatgacgcgccggagtcggagtggaagaactgggtgtggcactcggag
aacgacctcttcatggagggagccaacttcaccgtcagcggcggccagaagatcaacagg
aatttccacaagaaggacctcatcaagcccaagaacgggtcctacgtcaccaggctcacg
cgatacgccggcgcgctcgcctgcaggcccggcaagccctgctag
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