Sorghum bicolor (sorghum): 8065962
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Entry
8065962 CDS
T01086
Name
(RefSeq) SWI/SNF complex subunit SWI3D
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
8065962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbi03021
]
8065962
03036 Chromosome and associated proteins [BR:
sbi03036
]
8065962
Transcription machinery [BR:
sbi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
8065962
Chromosome and associated proteins [BR:
sbi03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
8065962
PBAF complex
8065962
GBAF(ncBAF) complex
8065962
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
Zn_ribbon_2
Motif
Other DBs
NCBI-GeneID:
8065962
NCBI-ProteinID:
XP_002446041
UniProt:
C5YBP1
LinkDB
All DBs
Position
6:1242658..1250841
Genome browser
AA seq
903 aa
AA seq
DB search
MEPKPSPPPPPPAAPSRRRGAATKRKERAASAAPSVSPSPKRQARDCGPVDPPSLPPPQP
RSRQPARKPRRTPARKKSTQRSVKPPPMQEEEEGPPPPPPPPPPPPPPPPVPPPRPSREK
EIEAVLSRGAGVHVVPTFAGWFSWKEIHPIEKQMLATFFDGKSERRTPEIYLGIRNLIMN
KFHFNPEVHLESKDLCELSIGEMDARLAILEFLAHWGLVNFHPFPPVTQERKLVESKSSA
EIEDEISLVEKLFQFETVHSYLVPVSKKVEAISPVQFTSLLSEPTLAENAIGAAESSVEY
HCNSCSVDCSRKRYHCRTQVDFDFCSECYNEGKFDEGMSKADFILMESAEVPGSGGSNWT
DQEILLLLEALEIFKGKQWGEIAEHVATKTKEQCMLYFLQMPISEPFLDGEDFNETPQKI
TEQDLEIGPSDVPDEMDVDGNAEGKESTDEKAYKKANSISSETRTKLADQNVSEKEDTMD
AGGDDLVASIDDESNKSSLMDPAHEKISANADVSGEHTSNFVIDVLRSTFEAVDHFLGQE
DLGSFAEAGNPVMALAAFFASLAEHDDAVSSCCSSLRAISEISPALQLATEHCFILPDPP
SDLKDPTSTFSACTGSECQENDLGLKKENATFISQKEHPELSDTKERGPDAEAKSNSSKD
SDNPIATVDCSVASDKMRDGCNANAISCSATSNNATEPSSIASQEASAASTKDTTNPEQV
EGDKPGSEELPAVVSPSQEKTEPKKIERAPAASSSIQQSECKQTGNGNSEEPKSNENIAS
DDDPIIRLQRAAGTAISAAAVKAKFLAEQEEGYIRQLAALVIEKQFQKIQTKMSFLTEVE
NLVLRSRESTERMRKKLMLERNMIIASRMGAAAAAAASRTNQQGAPGTRLPVGYALNPQL
RRP
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggagcccaaaccctcgccgccgccaccgccgccggccgccccttcgcgccgccgcggg
gcagcgaccaagcgcaaggagagggccgcatccgcagcgccctccgtgtccccgtcgccg
aaacgccaggcccgggattgcgggcccgtcgacccgccgtccctcccgccgcctcaaccg
cggagtcgccagccggcacgcaagccgcggcgcacgcccgcacgcaagaaatcgacgcag
cgctccgtgaagccgccgcccatgcaggaggaggaggagggcccgccgccgccgccgcca
ccaccaccaccaccgccgccgccgccgccggtgccgccaccacggccgtcgcgggagaag
gaaatcgaggccgttctgtcccgcggcgctggcgtccacgtcgtacccaccttcgccgga
tggttttcgtggaaggaaattcaccccatcgagaagcaaatgttggctacattttttgat
gggaaatcagagagacggacacctgagatatacttagggattagaaatttaatcatgaac
aagtttcactttaatcctgaagtgcatctggagtccaaagatttgtgtgagttgtcaatt
ggggagatggatgctcgtctggcaatcttggagtttttggcccattggggcttagttaat
ttccacccttttccaccagttacacaggaacgcaagctggttgagagtaaaagtagtgct
gagatagaggatgaaatttctttggttgagaagttatttcagtttgaaacagttcattcg
tacctggtacctgtttcaaagaaagttgaagcaatatctccagttcagttcactagcttg
ctctctgagcctaccctagctgaaaatgcgataggtgcagctgagtcttctgttgagtat
cattgcaactcctgctcagttgattgttcaagaaagcgttatcattgtaggactcaggta
gactttgatttttgttctgagtgctacaatgaaggaaaatttgatgaaggcatgtcgaaa
gctgatttcatccttatggaatctgcagaagttccagggtctggtggttcgaactggact
gaccaggagatattgcttcttttggaagcgttagaaattttcaaaggaaaacaatggggt
gagattgctgagcatgttgctacaaaaacaaaagaacagtgcatgttatacttccttcaa
atgccaatttctgaaccatttctagatggtgaagatttcaatgaaacaccccagaagatc
acagaacaggatttagaaattggtccttctgatgtacctgacgaaatggatgtagatggc
aatgcagaaggaaaagagagcactgatgaaaaagcttacaagaaagcaaattctatttct
tcagaaacaagaacaaaattagctgaccaaaatgtttctgagaaagaggataccatggat
gcaggtggtgatgatctagttgcttccattgatgatgaatcaaataaatcttcattgatg
gatcctgcacatgagaaaatttctgctaatgctgatgtctctggggaacacacatccaac
tttgttattgatgtcctgagatctacttttgaagcagttgatcactttctgggccaagag
gacttgggttcatttgctgaagcgggaaatcctgtgatggcactagctgcattttttgct
tctcttgctgaacatgatgatgctgtttcttcatgctgtagttcattgagagctatatca
gagatatctcctgctctccaactggcaactgaacactgttttattcttccagatccacca
agtgacctcaaagatccaacttccactttcagtgcttgcacaggcagtgagtgccaagaa
aatgatttaggtctcaaaaaggagaatgctacattcatctcacagaaagagcacccggaa
ttatctgacacaaaggaaagaggtcccgatgcagaggccaaatccaacagctcaaaggat
tctgataatccaattgctacggtggactgtagtgtagcatctgataagatgagagatggg
tgtaatgctaatgccatttcatgttcagctacttcaaataatgcaactgaacctagttcc
atagcttcccaagaagccagtgcagcaagtacaaaggacacaactaaccctgaacaagtt
gaaggggacaaaccaggttctgaggaattaccagctgttgtttcaccttcacaagagaag
acagagcccaagaagattgaacgtgcacctgctgcctcgtctagtatacaacagtctgag
tgcaagcaaactggaaatggcaacagtgaagaacctaaaagcaatgaaaacattgcgtcc
gatgatgatcccataataaggctacagcgagcggctggtactgccatttcagcagctgca
gtgaaggctaagtttcttgcggaacaggaggagggttatattcggcaattagctgcactt
gtgatcgaaaagcagtttcagaagatacaaacaaaaatgtcgtttctcactgaagttgaa
aacttggtcttacgatcgagagaatcaacagagaggatgcggaagaagcttatgttggag
cggaacatgataattgcttcccgaatgggtgcagctgctgccgccgcggcttccagaaca
aaccagcagggggctccggggactagactcccagtagggtatgccttgaatccgcagctg
aggcgcccttga
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