Sorghum bicolor (sorghum): 8066469
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Entry
8066469 CDS
T01086
Name
(RefSeq) E3 ubiquitin-protein ligase UPL3
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
8066469
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sbi04121
]
8066469
Enzymes [BR:
sbi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
8066469
Ubiquitin system [BR:
sbi04121
]
Ubiquitin ligases (E3)
HECT type E3
8066469
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Arm
HEAT_EZ
HEAT_2
UNC45-central
Motif
Other DBs
NCBI-GeneID:
8066469
NCBI-ProteinID:
XP_021315798
LinkDB
All DBs
Position
4:complement(125081..134424)
Genome browser
AA seq
1832 aa
AA seq
DB search
METRSSSRKRAAAAASSSASKRPRRNSSSSSSSAPPPMEPSPSSRRRSRAAAAADKGKDP
DPSSSDHPSPPVPDEDADVPFPQSFTSASTALQGLLRRLGAGLDDLLPSSSSAPSSATSG
HLKRILAGLQAHGDESRQLQSLMQLCEMLSIGTEDSLAAFPVDAFVPILVGMLGREDEPA
TAGASPDVMLLAARALANLVDVLPSSCSAVVHYGAIQCFCARLLTIEYMDLAEQSLQALK
KISLEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANICRKLPSDASEFVMEAVPLL
TNLLNHHDSKVLEHASVCLTRIAEAFAHYPDKLDELCNHGLVAQAASLIAVGNSSGQASL
STSTYTGLIRLLSICASGSLLAVKTLLLLGISGTLKDILSGSALISGASVSPAVTRPADQ
MFEIVSLADDLLPHMPARIIKLPTYYHAYKGSSTKKSASIKQEGAGSTGNERSGRERLLR
EQPELLQQFGMDLLPTMTQVYGSSVNAPIRHKCLSIIGKLMYYSSAETIQSLLGTTNISS
FLAGILAWKDPQVLIPALQIAEIMMEKLPEAFSKLFVREGVVHAVESLICSESSNTMPSQ
VPPQDKDNDSAMPSRPRRQRRRGGAVAAENSSLDESNSSNLGVTCSTTITSEAPNTSLRL
AVSDHAKSFKDKYFPADTDSSDIGVTDDLLKLRALCAKLNTVSENVKTKAKGKSKAISAN
FLDISIDVEEQLDKIISEILSELSKVNGVSTFEFIRSGVVTALLDYLSCGTFGKEKVSEG
NLPQLRQQVLRRYKSFISVALSIDHERDETPMALLVQKLQSALSSLERFPVVLSQSSRIG
IGGSRLTSGLSALAQPFKLRLSRAQGEKSLRDYSSNIVLIDPFASLAAVEEFLWPRVQRG
EVPSKPIIPSGNNSESGVPGTTAGASLTAAMAQSGRRPTTRSKSSAAGVGTSKKDSHDES
TSTAKGKGKAIVKPNSDESKGPNTRNAARQKSASEKDSEMKRAQGHSSSEDEELDTSPVE
IDDALMIDDDDISDDDDDDDDDDDHEVLQEGSLPICSQDGVHDVKLSDADECNIGSASFS
QAQPSSGSGARNTSSRVPDSTEFRSTSTFGSRGAMSFVAATMAGLASVGGRSVRGGRDRR
GLSLGGSMNDHNKLIFTAGGKQLSKHLTVYQAIQRQLMLDEDDEERFNGSDIPNDGNRFW
GDVFTITYQKADNQVEKGCQGTSTSLNIKSDSYRSISEAQGVSLLDSILQGELPCDLERT
NSTYNILALLRVLEGLNQLSSRLRLQGASDDFAEGKITTLDELYRTGAKVPSEVFVNSKL
TPKLARQMQDVLALCSGSLPSWCYQMTKACPFLFPFETRRQYFYSTAFGLSRALNRLQQQ
QSDNHSSGGEREVRFGRLQRQKVRVSRNRILDSAAKVMEMFSSQRAVLEVEYFGEVGTGL
GPTLEFYTLLSHELQSAQLGLWRSSSYDSGLHIDRKDVISLDPEDDSSGKGPNTDLPGDG
RHLIQAPLGLFPRPWPPKVDASEGSRLFKVLEHFRLIGQVMAKVLQDGRLLDLPLSTAFY
KLILGQELDLFDIVSFDSEFGKTLQELRVLVERKQFLESTCGKNQLQVADLRFHGASIED
LCLDFTLPGYPDYVLKEGEGSTIVNIYNLEEYITLVVDATVKSGIKRQVEAFRSGFNQVF
DMSSLHIFSPQELDYLICGRQEIWELESLVDNIKFDHGYTAKSPAIVNLLEILSEFTPEQ
QHAFCQFVTGAPRLPPGGLAALNPKLTIVRKHPSSAVNTSNSTGATESADDDLPSVMTCA
NYLKLPPYSTKEIMRKKLLYAILEGRGSFDLS
NT seq
5499 nt
NT seq
+upstream
nt +downstream
nt
atggaaacacgcagcagcagtcgcaagcgcgcagcggccgccgcctcctcgtccgcctcc
aagcgcccccgccgcaactcctcctcctcctcctcctcagcgccgccgccgatggaaccc
tcgccctcctcccgccgccgctcccgcgccgccgccgccgccgacaagggcaaggacccc
gacccctcctcctccgaccacccttctcccccggtccccgacgaagacgccgatgtgccc
ttcccccagtccttcacctccgccagcaccgccctccagggccttctccgcaggctcggc
gccggcctcgacgacctcctcccctcctcctcctcagcgccctcctccgccacgtccggt
cacctcaagaggatcctcgccggcctccaggcgcacggcgacgagtcgcgccagctccag
tccctcatgcagctctgcgagatgctctccatcggcaccgaggactcgcttgccgccttc
ccagtcgacgccttcgtcccaatcctcgtcgggatgctcggccgcgaggacgagcctgcc
accgctggtgccagcccagacgtcatgctgctcgctgcgcgggcactcgccaacctcgtt
gatgtgctcccctcctcctgctctgcggtcgtgcactacggggccatacagtgcttctgt
gctcgactgctcaccatagagtacatggacctcgccgagcagtctctacaagcccttaag
aagatctctctggagcacccaaccgcctgtttgcgagctggtgcgctaatggccgttcta
tcgtaccttgacttcttctccactggggttcagagggtagccttgtctactgctgcaaat
atttgcaggaagctgccgtccgatgcttctgagtttgtcatggaagctgtccccttgctc
acaaatctcctaaatcaccatgattccaaggtactggagcatgcttctgtttgtttgaca
cgcattgctgaagcttttgcccattaccccgacaaacttgatgaactctgcaatcatgga
ttagttgctcaagctgctagcttgatagctgttggcaactcctctggccaggcgtcactg
agtacatccacatatacaggcttaatccgtcttctctcaatatgtgcgagtggatccctg
ctggcagttaaaacactacttcttcttgggatcagcggcactcttaaagacattctttct
ggctctgctttgatttctggagcatcagtctcccctgctgtaacaaggcctgctgatcag
atgtttgagattgtgagccttgctgatgatttacttccgcatatgcctgccagaatcatt
aagttaccaacatactaccatgcatataaaggctcttcaacaaagaaatctgcttccatc
aaacaagagggggctggttcaacaggaaatgaaaggtctggccgtgagaggctattgcgt
gagcaacctgagctcctacaacagttcggtatggatttgttacccacaatgacacaggtg
tatggttctagtgtaaatgcaccaatacgtcacaagtgtttatcgatcattgggaagtta
atgtactacagctccgctgagacaatccagtctctccttggcacaacaaacatatccagc
ttccttgcaggcattcttgcatggaaagatcctcaagtgttgattcctgctcttcagata
gcagaaataatgatggaaaagcttccagaggcattttccaagctgtttgtgagggaaggt
gtcgttcatgccgtggagtcacttatatgttcggaatcctccaacacaatgccttctcag
gtgccacctcaggataaagataatgattctgccatgccatcacgtcctagacgtcaacgc
cggcgtgggggtgctgtggcagcagaaaatagttcattagatgaatcaaatagttccaac
cttggggttacatgctcaacaacaatcacttcagaagctccaaataccagccttcgtttg
gcagttagcgatcatgcaaagtctttcaaagataaatacttcccggcagacactgattca
agtgatattggggttactgatgaccttcttaaactgagggcactctgtgcaaagttgaat
actgtatctgagaatgtcaaaacaaaagccaaagggaaatcaaaagctataagcgctaat
tttttggacatctcaattgatgtcgaagaacaattagacaaaataatatctgaaattctc
tctgagcttagcaaagttaatggtgtttccacatttgaattcattagaagtggtgttgtc
acagcattgcttgactatttgtcctgtgggacatttgggaaggaaaaggtatctgaagga
aacctacctcagcttcgtcagcaggtccttaggcgatacaagtccttcatatcggttgcc
ctttctattgatcatgaacgggatgaaactcccatggcactgttggttcagaaactgcaa
agtgcattgtcttcgctggaacgtttccctgttgtgctcagccagtctagtaggattggt
attggagggtcccgtttgacttcaggtcttagtgctctggctcaacccttcaagcttcgt
ctgtcccgagctcaaggcgaaaaatcacttcgggattattcatcaaatattgtgcttatc
gatccatttgccagtctagcagctgttgaagaattcctttggcccagagttcaacgcggt
gaggttccgtcgaagcctataattccatctggtaataattctgaatctggggttcctggc
accacagctggtgcgtcattaacagctgcaatggctcaatctggtcggcgtccaacaaca
agatcaaagtcgtctgctgcaggggttggtacatctaagaaggattctcatgatgaaagc
actagtactgccaaagggaaaggcaaagctattgtaaagccaaactcagatgaatcaaaa
ggacctaatacaaggaatgctgcccgccaaaaatctgcttcagagaaagattcggaaatg
aagcgagctcagggccacagtagttctgaggatgaagagcttgacacatctcctgttgag
attgatgatgctttgatgattgatgatgatgacatttcagatgatgacgacgacgacgac
gacgacgatgatcatgaggttctccaagaagggtctcttccaatctgttctcaagatggt
gtgcatgatgtgaaactgagtgatgctgatgagtgtaacattggctcagccagttttagc
caggcgcagccatcatctggttctggtgctagaaacacttctagcagggtaccggattct
actgaatttcgaagtacaagcacattcggttcaagaggtgcaatgtcatttgttgctgcg
acaatggctgggctggcttctgttggtggtcgcagtgttagaggtggccgagatcggcgt
ggtctgtcacttggaggtagcatgaatgatcacaataaacttatattcactgctggtggg
aagcagcttagcaaacatttgactgtatatcaagctatccaacgtcaacttatgctcgac
gaggatgatgaagaaaggtttaatggatctgatataccgaacgatggaaaccgtttctgg
ggtgatgtgttcacaataacgtaccagaaggctgataaccaagttgagaagggatgccaa
gggacttccacctcattaaacataaaatcagattcatacaggtccatctctgaagcacaa
ggtgtttctcttcttgatagcatcttacaaggagaacttccttgtgatcttgagagaaca
aactcaacatacaacattttagcattattgcgtgtactggaggggcttaatcagttatcc
tctcgtttaagactacagggagcatctgatgattttgctgagggaaaaatcactaccttg
gatgagctatatagaactggagccaaggtaccttctgaagtgtttgtcaatagcaaattg
acaccaaagcttgctcggcaaatgcaggacgttctcgcactatgtagtggcagtttacct
tcttggtgttatcaaatgaccaaggcctgcccatttctgtttccttttgagacaaggagg
cagtacttctattccacagcctttgggttgtcgcgagcattgaatcgacttcagcaacag
cagagtgacaatcacagctctggtggtgaaagagaggtccggtttggcaggttacaacgt
cagaaagttcgtgtttcccgtaaccgtattctagattctgctgctaaagttatggagatg
ttctccagtcagagggctgttcttgaggtggaatactttggcgaagttggaactgggctg
gggcctactttggagttttatactctcttaagccatgaactacaaagtgctcaactggga
ttatggagatctagttcatatgattcaggattgcacattgataggaaggatgtgattagt
ttagatcctgaagatgactcatcaggaaaaggacccaacacagatctaccaggtgatggc
aggcatttgatacaagctcctcttggattgttccctcgaccttggccacctaaagttgat
gcttcagaaggtagcagattgttcaaagttttggagcatttccgcttaataggtcaagtg
atggcaaaagtcctgcaagatggcagacttttagatttgcctttatcaacagcattttat
aagcttatacttggacaggaacttgatttgtttgacatagtctcatttgattctgagttt
gggaagacattgcaagaactgcgagttcttgttgaacgaaagcagttccttgaatccact
tgtggcaagaatcagctacaagttgcagatttgcgtttccatggtgcttctattgaagat
ttgtgtttagattttactcttccaggttatcctgattatgtgctcaaagagggggaagga
agcacaattgttaatatttacaatttagaagagtatattactttggtagtggatgctaca
gttaagtcagggataaagcgacaggttgaggcatttagatcagggtttaatcaggtgttt
gacatgtcatccctccacatattttcacctcaagaacttgactatctaatatgtggccga
caagaaatttgggagttggaatcgctggtggataacataaaatttgatcatggatacact
gctaaaagtcctgcgatcgttaatctacttgagattttgtcggaattcacccctgagcag
cagcatgcgttctgccagtttgtaactggtgctcctcgtcttccacccggtggattggca
gcccttaatcctaagcttactatagttaggaagcacccttcaagtgctgtgaatacttca
aattcaactggggcgacagagtcagctgatgatgatttacctagtgtgatgacatgcgcc
aattatctgaagcttcccccgtactccacaaaagaaatcatgcgcaagaagttgctttat
gcgatcctggaaggccgaggatcgtttgatctttcataa
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integrated database retrieval system
