Sorghum bicolor (sorghum): 8066555
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Entry
8066555 CDS
T01086
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8066555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbi03041
]
8066555
Enzymes [BR:
sbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
8066555
Spliceosome [BR:
sbi03041
]
Complex C
Other components
Step II factors
8066555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
ResIII
ATPase
FtsK_SpoIIIE
AAA_30
ABC_tran
SLFN-g3_helicase
T2SSE
AAA_16
AAA_29
Motif
Other DBs
NCBI-GeneID:
8066555
NCBI-ProteinID:
XP_002441617
LinkDB
All DBs
Position
9:complement(58801685..58810036)
Genome browser
AA seq
705 aa
AA seq
DB search
MYMPTNFDCFEKIIVCTPMSFTGSAPGWRQLIRQQRKSLPIASVEKRLVEEVRKNDTLII
VGETGSGKTTQLPQFLYDGGFCKDGKVIGITQPRRVAAVTVAKRVAEECNDQLGKKVGYS
IRFDDSTSNATRIKYMTDGLLLREALLDPLLSKYSVIVVDEAHERTVHTDVLLGLLKKVQ
HSRANANKNGKTLPDVQGHSQNLTLKECQGIRCAPLKLIIMSASLDAKCFSDYFGGAKAV
HIQGRQYPVDILYTYQPESDYMDATLVTIFQIHLEEGPGDILAFLTGQEEIESLERLIHE
RARLFPPESSKIWVTPIYSSLPSEQQMNAFKPAPAGTRKVVLATNIAETSVTIPGIKYVI
DPGMVKARAYNPVTGMESLIIIPVSKAQALQRSGRAGREGPGKCFRLFQESEFDKLVDST
VPEIKRCNLSNVVLQLKALGIDDIIGFDFMEKPSRTAILKSLEQLILLGALTDDYKLSDP
VGHQMARLPLDPMYSKALIVASKFKCLEEMLIVVSMLSVESIFFSVREKLEEARAARKGF
ESAEGDHITLVNVYRAAAECLEKSRNANAKEKTMEKALNRWCRENFINYRSLRHARDVHS
QIQGHAQQMGLNLSSCGDDMVLFRRCLTSAFFLNAAMRQPDGSYRALATGQSVQIHPSSV
LFRTKPDCVIFNELVRTTQNYVKNLTRIDPLWLAELAPQYYATEE
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgtatatgcctactaacttcgattgctttgaaaaaattattgtgtgtacacccatgtcc
ttcactgggtccgcccctggatggaggcagctgattcggcaacagcggaagtcgctcccc
attgcgtcagtggagaagaggctagttgaggaggtgaggaagaacgacacgctgattatt
gttggtgagactgggagtggcaaaactactcagcttccacagtttttgtatgatggtggg
ttttgtaaggatggtaaagtcattggcatcactcagcctcgcagagttgcagctgttaca
gtagcaaagcgtgtagcggaggaatgcaatgaccagctcggcaaaaaggttggatactcc
atcagatttgatgattcgacatctaatgcaacaaggattaaatacatgactgatggtttg
cttctgagggaagcacttttggatccactcttgtctaagtacagtgttatagttgtcgat
gaggctcatgaaagaactgttcataccgatgtcttgttgggtttgttgaaaaaagtgcaa
cattcccgagctaatgccaataaaaatgggaagactttgcctgatgtacagggccattct
caaaatttaactcttaaggaatgccaaggaataagatgtgctcctctaaagctgataatt
atgtctgctagtttggatgctaagtgtttttctgattattttggtggtgctaaagctgta
catattcaaggtcggcaatatccggtcgacatactatatacttatcagcctgagtctgat
tatatggatgccacactagttactatctttcagatccatttggaggaagggcctggagac
attctcgcatttctgacaggccaagaggagattgaatcactggagagacttattcatgag
cgtgctcgtttatttccaccagaaagtagtaagatatgggttacacctatctattcatct
ctcccatcagaacagcaaatgaatgctttcaagccagcaccagctggaacccgcaaggta
gttctagctacaaatattgctgagacttcagtaacaatacctggcatcaaatatgttata
gatcctgggatggtaaaagctcgtgcttacaatcctgtgactggaatggaatcactaatc
atcatcccagtctctaaagcgcaggctcttcaaaggagtggtcgtgctggacgcgaggga
ccagggaagtgcttccgattgttccaagaaagtgagtttgataaactggtggattctact
gtgcctgagatcaagcggtgtaacctctcaaatgttgttctgcaactcaaggctcttgga
attgatgacatcataggtttcgattttatggagaaaccatcaaggactgctattttgaaa
tcactggagcagttaatcttactaggggctctgactgatgattataagctctcagatcca
gttggtcatcagatggctaggctgcctttggatccaatgtactccaaggcattaatagta
gccagcaaattcaagtgcttggaagaaatgctcattgttgtatctatgctttcagtggaa
tcaattttcttctctgtgcgtgagaagttagaagaggcaagagctgccaggaagggtttt
gaaagcgccgaaggagaccatatcacattggtgaatgtctatcgagcagctgcagaatgc
ttggagaagagcagaaatgcaaatgccaaagaaaaaacaatggagaaggctttgaacagg
tggtgcagggaaaactttatcaactaccgctctctaagacatgctcgcgatgttcacagt
caaattcagggccatgcacaacaaatgggtctgaacctgtcatcatgtggagatgacatg
gttctatttcggagatgccttacgtctgccttcttcttgaatgcagcgatgcgacagcca
gatggatcatacagggcccttgcaactggccagagcgtgcagatccacccttcatccgtg
cttttcaggaccaagcccgactgtgtcatcttcaacgagctagttcggacgacacagaac
tatgtcaagaacctgacccgtattgaccccttgtggctggctgagctcgcccctcagtac
tacgcaacagaggagtaa
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