Sorghum bicolor (sorghum): 8067368
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Entry
8067368 CDS
T01086
Name
(RefSeq) protein RRP6-like 1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8067368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8067368
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
8067368
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Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
8067368
NCBI-ProteinID:
XP_021306462
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All DBs
Position
1:24675916..24683155
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AA seq
901 aa
AA seq
DB search
MEADEASPPPPPWAQNKSAAAIEASSGPLAAASSRLSARSRALPSSRDFHFYNNFPAFKS
PVGAAAAKADASLGVLGAAPLLPTRQQQLFPGGGDLDDAHDWLVALNDDLLERFGAATDE
FKALREKEEASGRRAAPEAGDGFQMVCGKKKKKVGDGDEERVGRVEAFGGSGSVKMVTKD
KAAAPGVKAKVPFHIRTIPRPQDVYRIVVDNSSKPFEHVLLERSEDGTRVMHPLEKLPVE
QQINRNVLDSEPVKPPALVDTPFTFVEDLKTLEVLATKLKDATEFAVDLEHNHYRTFQGL
TCLMQISTRTEDFIVDTLKLRKYLGDYLREFFRDPTKKKVMHGAGRDIIWLQRDFSIYVC
NLFDTGQASKVLQMDRNSLEHLLHHFCGVTANKEYQAADWRLRPLPDEMIKYAREDTHYL
LYIYDLMRLRLVNESSGENDLLLEVCKRSNEICLQLYEKEQLTDTSYLHIHGLKENELNA
RQLSVLSSLYRWRDGIARAEDESTGYILPNKTLLEIAKEMPVTSGKLKRIVKSRNLFLER
HLGHVINNIRDAIAASGAFESVAEQLKKGKLEELTVADVKNSSEDIEMIPAVDVGNIEDP
NDESAVVSAVITNVGAAPCMGTITSEASLGNMHLEDVVPETKDSGTSSGFTGLADTEKLS
NDQQQAAKATVQVSKRPTAFGALFGKPAAGRKPDLFLGFPNVQGKTKVDKITSSVVLPFH
HFSGGAKPSSPILPAKESLHSEPENIQHGDPACRLEEVIQLDMETDEPQPPENGNEDGHC
ETEDTEMSKSPSDDPSGTEQRFRTLNEERNIQQNQKTPREFELSVPVVPFDYAEARKNLV
SSQPKAERRKDDAVARAINTDSGDKRIASKKPGGGEDEGNFQHPRRRQAFPPSGNRSATY
H
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atggaagcagacgaggcctcgccgcctcccccgccgtgggcgcagaacaagtcggccgcg
gccatcgaggcctcgtcgggcccgctcgccgccgcgtcctcccgcctctccgcccgctcc
cgtgcgctcccctcgtcccgcgacttccacttctacaacaacttcccggccttcaaatcc
cccgtcggcgccgcggccgccaaggccgacgcctccctcggcgtgctcggcgcggccccg
cttcttccgacgcggcagcagcagctgttccccgggggcggcgacctcgacgacgcgcac
gactggctcgtcgccctcaacgacgacctgctcgagcggttcggcgccgccacggatgag
ttcaaggcgctccgggagaaggaggaggcctccgggcggagggcggcgcctgaggctggg
gacgggttccaaatggtgtgcgggaagaagaaaaagaaggtgggcgatggggatgaggaa
cgcgttggaagagttgaggcatttgggggttctggctctgtgaagatggtaaccaaggac
aaggcggccgcaccgggggtgaaggctaaggtgcccttccacatccgcaccatcccacgg
ccgcaggatgtgtaccgcattgtggtggacaactccagcaagccgttcgagcatgtcttg
cttgagcgcagcgaggatggtactcgtgtcatgcacccattggaaaaactccctgttgaa
caacaaatcaacagaaatgttcttgatagtgagccagtaaagccacctgctttagttgac
actccttttacatttgttgaagacctgaaaaccttggaggtgctagccacaaagctgaag
gatgcaactgagtttgctgttgatttggaacacaaccattataggacgtttcagggtttg
acatgcttgatgcagatttcaacaagaacagaggactttattgttgacactcttaagctt
cgtaaatatcttggtgattatcttagagaatttttcagagatccaaccaagaaaaaggta
atgcatggcgcaggtcgtgatattatatggcttcaacgagacttcagcatatatgtctgc
aacctttttgacacaggccaggcttcaaaggtcttacagatggaccgtaacagcttggag
catcttttgcaccatttctgtggagtaactgcaaacaaagaataccaagctgcagattgg
agattgaggccccttcctgatgaaatgatcaaatatgctagagaggatacacactatctg
ctgtatatatatgacctgatgagattgagactagtgaatgagtcatcaggggaaaatgat
cttcttttagaggtttgcaagcgcagcaatgaaatttgcttgcaactatatgagaaggag
cagctgactgatacatcatatctacatatacatgggttgaaagaaaatgaactgaatgca
agacagctgtcagttctttctagtctatatcgatggagagatggcattgcccgtgctgag
gatgagagcactggctatatattacccaataaaactctacttgagatagcaaaggagatg
cctgtgacaagtgggaagttaaaaagaattgttaaatcaagaaatttgtttcttgagcgc
catctcggccatgttattaacaatataagggatgccatagcagcttctggtgcttttgaa
agtgtagcggagcagctgaagaagggaaagcttgaagagttaacagtggcagatgtgaag
aacagcagtgaggacattgaaatgattcctgctgttgatgttggtaacattgaagatccg
aatgatgaatctgctgtagtttctgcagtgattacaaatgttggtgctgctccctgtatg
gggactattacaagcgaagcttctttgggtaatatgcatttagaggatgttgtgcctgaa
acaaaggactctggtacttcatcagggtttactggactggcagatacagaaaaactgagc
aatgaccagcagcaagcagcaaaggctactgttcaagtatcaaagaggcctacagctttt
ggagctctgtttggaaaaccagctgctggacgaaagccagatcttttcctagggtttcca
aatgttcagggtaagactaaggtggacaagataacgtcttctgtggtacttccttttcat
catttctctggtggtgcaaaaccttcatcacccatccttccagcaaaagaatcgttgcat
tctgaaccagaaaacatccaacacggtgatccagcttgtcggttggaagaagtgatacag
ttggacatggaaacagacgagccacaaccaccagaaaatggcaacgaggatggacactgt
gagactgaagacactgagatgtcaaagtccccttcagatgacccgtctggtactgagcaa
cgattccgaacactcaacgaagaaagaaacattcagcagaatcagaagacacctcgagaa
tttgaattgagtgttccggtggtgccttttgattatgcggaagccagaaagaatctcgtg
tctagtcagcctaaagctgagaggagaaaagacgatgcggttgcaagggctataaataca
gactctggagataagcggattgcttcaaaaaagccaggtgggggagaggacgagggaaat
ttccagcatccaaggagacggcaggctttcccgccttctggcaatagaagtgctacatat
cactag
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