Sorghum bicolor (sorghum): 8067490
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Entry
8067490 CDS
T01086
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
8067490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8067490
04121 Ubiquitin system [BR:
sbi04121
]
8067490
03036 Chromosome and associated proteins [BR:
sbi03036
]
8067490
03400 DNA repair and recombination proteins [BR:
sbi03400
]
8067490
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
8067490
Ubiquitin system [BR:
sbi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
8067490
Chromosome and associated proteins [BR:
sbi03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
8067490
DNA repair and recombination proteins [BR:
sbi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
8067490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-RING_UBOX
zf-C3HC4_2
zf-RING_2
zf-C3HC4
RTT107_BRCT_5
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
zf-HC5HC2H_2
zf-RING_6
PHD_NSD
Rad50_zn_hook
Motif
Other DBs
NCBI-GeneID:
8067490
NCBI-ProteinID:
XP_002440053
UniProt:
C5Z0U2
A0A921U5M1
LinkDB
All DBs
Position
9:54447624..54452551
Genome browser
AA seq
996 aa
AA seq
DB search
MADVGSLERMGRELKCPICLSLFTSAVSITCNHIFCNACLTESMKSASCCPVCKVPFHRR
EIRPAPHMDNLVSVFKSMEAAAGTSIVSTQLTPAPKVAECGGNSAGKPKRSNKKKPASRN
KKNTPKATKTSASCSTAKPSISKNKRIHVTPFPESETPIRPKKVMKSDEQKSKQNGDVNE
EDKDKTLNSDIPESPSLSPFFWLREEEENEGGTAETLSEPPSLDTPLRHNAPTFSDIKDS
DDERSNDMTPNSKAEVSEIFDSEIFEWSQRPCSPELRSTPLKSQGKLKNILDQITEVDDD
EDMNLGGSFDKLDLESNVAQPLNAEEVKKKKLARPRKRKNSKLPSCGKLCTRGSDAEHQV
ANIPESIVAKPWQKDNSKKERNTSNGGNMVSGSNTRAVFSSDKSMNTFSPQAGGLGNEVP
ENQLSERIPKKGTNSRRKLEIAGDSAVKTAENKSEQRGKRIRRISDGAVAEKIRILSEAE
NEIELFQLHSLTKGCTQHKPLDGRSKKNIVSNISPNTPSILPGRDQFNIGPNTPSILPGR
CPLNEAIRTVPSVRNVSVKNGSAKSIEQQDYSGTIRSCTARNAVLKKCEGKASKLSCAFC
QSDEITEGSGEMVHYHNGKQVPAAFDGGASVVHCHKNCLEWAPDVYFEDDSVFNLTNELA
RSKRIKCACCGIKGAALGCFETSCRKSFHFTCAKLIPECRWDNENFVMLCPLHQSSKLPR
ETSGLKKKSHRKLAPKGPSQVNTSQCHGNKWTWPSGSPEKWVLCCSALSAAEKGIVSEFG
KLAGVPISTSWSPNVTHVIASTDMSGACKRTLKFLMAILNGKWVISIDWVKTCMELMEPV
DELKFEVSTDVHGTAEGPRLGRQRVINKQPKLFDGFQFYLHGDYSKSYRGYLQDLVVAAG
GTVLQRKPVSRNQQKLLDDSSFILIVYSIENQDKAKPGSRAGINTNHSQVDAQALACASG
GKVVSSAWIIDSIAACKVQPFKGAFHAALHVCLHAR
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtggggagcctcgagaggatgggccgggagctcaagtgccccatctgtttg
agcctgttcacttcggcggtgtccatcacctgcaatcacatcttctgcaacgcctgcctg
acggagtcgatgaaatctgcctcctgctgccccgtatgcaaggtcccgttccaccggaga
gaaatacggccagcccctcacatggacaatttggtgtctgttttcaaaagcatggaagct
gcagcaggcactagtattgtgtcaacacagctgactcctgcacccaaagttgcagagtgt
ggtgggaacagtgctgggaagcctaaaaggtcaaataaaaagaagccagcatccaggaat
aaaaagaatacacccaaagctactaaaacttctgcatcttgctctactgcaaaaccttca
atctccaagaacaaaagaatacacgttacaccattccctgaatctgagacaccaataagg
cccaagaaggttatgaagtctgatgagcaaaaaagtaagcagaatggtgatgttaatgaa
gaggataaagataaaaccctgaattctgatataccagaaagcccttcattgtcacctttt
ttctggctgagggaagaagaggaaaatgaaggtggcactgctgaaactttgagtgaacca
ccatcattggacacacccttgcgtcacaatgcgcctacctttagtgatatcaaagattct
gatgacgaaaggtctaatgatatgactcctaatagcaaagctgaggtttcagaaatattc
gacagtgaaatctttgaatggagccaaagaccttgctcccctgagctgcgttctacccca
ctgaaaagtcagggtaaattgaagaatattctagatcaaatcacagaggtggatgatgat
gaagatatgaatcttggtggttcatttgataagttagaccttgaaagtaatgtagctcag
cctctcaatgccgaggaagttaagaagaaaaagttagcaagacctaggaaaagaaagaat
tcaaaactgcccagttgtggcaaactatgtacaagaggatctgatgctgagcaccaagtt
gcaaatatcccagaaagtattgttgcaaagccatggcaaaaggacaatagtaaaaaagag
agaaatacttcaaatggaggaaacatggtctctggcagcaacactagagctgtcttctct
agtgataaatctatgaatacattttcccctcaagcaggtggtttgggcaatgaagtacct
gagaaccagctttcagaaaggatccccaaaaagggtacaaacagtcgaagaaaacttgaa
atagcaggggatagtgcagtgaagactgcagagaataaatctgaacaaagagggaagcgg
ataagaagaatctctgatggtgctgtagctgaaaagataagaattctttcagaggctgaa
aatgaaatagaattgtttcagcttcacagcctcacaaaaggctgcacccaacataaaccc
ttggacggtagaagtaaaaaaaacattgtatcaaacattagtccaaatacaccaagcatt
ttacctgggagggaccaatttaacattggtccaaatacaccaagcattttacctgggagg
tgcccattaaatgaggccatacgcacagttccttcagtaaggaatgtctctgttaagaat
ggtagtgcgaaatctattgaacaacaagattactcaggaactatcagatcatgcactgca
cgcaatgctgtcctgaagaaatgtgagggtaaagcttctaagctttcctgtgctttctgc
cagtctgatgagatcacagagggatctggagagatggttcactaccataatggaaagcaa
gtacctgcagcatttgatggaggggccagtgtagtacattgccacaaaaactgtctggag
tgggctcctgatgtctactttgaagatgactctgtctttaaccttacaaatgagcttgct
agaagtaaaagaatcaaatgtgcttgctgtggaattaaaggtgctgcgcttggatgcttt
gagacgagttgtcgaaaaagcttccatttcacctgtgctaaattaatcccagaatgtaga
tgggataatgaaaactttgtgatgctatgccctttgcaccaatcttcaaagttgccaaga
gaaacttctgggttgaaaaagaagtcgcataggaaactagcaccaaaagggccatctcaa
gtaaacactagtcaatgtcatggtaataaatggacatggccatctggatcaccagagaaa
tgggttctctgctgttcagccctttctgctgcagaaaagggtattgtatcagaatttgga
aaactagctggtgtgcctatctcaacaagttggagtcctaatgttacccatgttattgca
tcaaccgacatgtctggtgcttgcaagcgcacactgaagtttctgatggcaatcctgaat
ggcaaatgggttatctccattgactgggttaaaacatgcatggaacttatggaaccagtt
gatgaactgaaatttgaagtttccactgatgtacatgggactgctgagggtcccagatta
ggtagacaaagagttatcaacaagcaacctaaattattcgacggctttcagttctatctc
catggagattactccaagtcctacaggggctacctgcaagaccttgtggttgcagccggt
ggaactgtcctgcagaggaagcctgtgtcaagaaatcagcagaagttgcttgacgacagc
tccttcatcctcatcgtctacagcattgagaaccaagacaaggcaaaaccaggatcaagg
gctggcatcaatactaatcatagtcaagttgatgctcaagctctggcctgtgcctctggt
ggcaaagttgtgagcagcgcatggattattgactccatagcagcttgcaaggttcaaccc
tttaagggagccttccatgctgccctacatgtgtgcttgcatgcacggtag
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