Sorghum bicolor (sorghum): 8067882
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Entry
8067882 CDS
T01086
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8067882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8067882
03041 Spliceosome [BR:
sbi03041
]
8067882
03009 Ribosome biogenesis [BR:
sbi03009
]
8067882
03016 Transfer RNA biogenesis [BR:
sbi03016
]
8067882
Enzymes [BR:
sbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
8067882
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
8067882
Spliceosome [BR:
sbi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
8067882
Complex C
U4/U6.U5 tri-SnRNP related factors
8067882
Ribosome biogenesis [BR:
sbi03009
]
Eukaryotic type
Pre-60S particles
Helicases
8067882
Transfer RNA biogenesis [BR:
sbi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
8067882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
8067882
NCBI-ProteinID:
XP_021304537
LinkDB
All DBs
Position
10:294884..302845
Genome browser
AA seq
1001 aa
AA seq
DB search
MDTLKRKAPDGPEAADQASPLKAPRVVAPTSEPPAPTALATAEPVACVHDVSYPEGYDAS
ASTSRAIAGGADASEPARKFPFQLDPFQSEAIRCVDNGESVMVSAHTSAGKTVVALYAIA
MSLRNQQRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQ
YKGSEVMREVAWIIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWV
AKVHKQPCHIVYTDYRPTPLQHYVFPSGGDGLYLVVDEKGKFREDSFQKALNALVPASDS
AKKKENGKWQKVIMAGKSSEESDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMD
LNEDDEKANIETIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEIL
FQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDRFRWLSSGEYIQMSGRAGRRGID
QRGICILMVDEKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQMRSEDGDPEKLLRHSFY
QFQADRSLPDLEKQIKELESERNSMVIEEEESLKDYYDLLQQHRSLKKDVHDIVLSPKHV
LPFLQPGRLVRIEYSTDEPANFSIDENVTWGIIINFEKVKSHGEDRRPEDSDYTVDVLTR
CSVTKDNNGKKTMKVVPLKARGEPVVVSLPLSQIDGLSSIRMYIPKDLLPVEARENTLRK
VEEVLSRFAKDGVPLLDPEEDMKVQSKSFRKATRRIEALESLFEKHDIRNSPHIQQKLKV
FHAKQELSAKIKSIKKTMRSSTALAFKDELKARKRVLRRLGYVTSDDVVEVKGKVACEIS
SADELTLTELMFSGALKDATVEQMVALLSCFVWQEKLQDAPKPREELDLLFYQLQETARR
VANLQLECKIQIDVESFVNSFRPDIMEAVYSWARGSKFYQIMEMTQVFEGSLIRAIRRLE
EVLQQLILASKSIGETELEAKLEEAVNKIKRDIVFAASLYL
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atggataccctcaagcgcaaggccccggacggccccgaagctgccgaccaggcctctcct
ctgaaagcaccgcgcgtcgtcgcccccacctcggagcctcccgctcccaccgccctcgcg
accgcggaaccagtcgcctgcgtgcacgacgtctcctaccccgagggctacgacgcgtct
gcctctacgtcccgcgccattgccggcggcgctgacgcctctgagccagcaaggaagttc
cccttccagctcgaccccttccagtccgaggccatacgctgcgtcgacaatggcgaatcc
gtcatggtttcagctcatacgtctgccggaaagacagtggttgcgttgtatgcaatagca
atgtctttgcgcaaccaacagcgggtcatctacacgtctccaatcaaggcactgagcaac
caaaagtacagggagttcaaagaagagttctctgatgttggtctcatgacaggggatgtc
acgattgagcctaatgcctcttgtctggtcatgactacagaaatttggcggagcatgcaa
tacaagggatctgaggtcatgagggaagttgcttggattatttttgatgaggtgcattac
atgcgggatagagagagaggagtggtctgggaggagagtatagtgatggctcccaagaac
tcacgctttgtcttcctctcagcaactgtacctaatgccaaggagtttgctgattgggta
gctaaggtacataagcaaccctgtcatatagtatacactgactatagacctacacctctt
cagcactatgtatttccttctggaggggatggattataccttgtagtggatgagaagggc
aagttcagagaggacagttttcagaaagcattgaatgcccttgtccctgctagcgacagt
gccaagaagaaggagaatgggaagtggcagaaagttatcatggcagggaaatctagcgag
gaaagcgacatattcaagatggtgaaaatgataattcagcgccaatatgatcctgtaata
cttttcagctttagcaaaagggaatgcgaatttcttgctatgcagatggctaagatggac
ttgaatgaggatgacgagaaggcaaacatcgaaacaattttttggagtgctatggatatg
ctttctgatgatgacaaaaaacttcctcaggtttcaaacatgctccccttactgaaacgc
ggcattggcgtgcatcattctggtctgttgcccattttaaaggaagtcattgagatactc
ttccaggagggcctcattaagtgtttgtttgccacagaaacattcagtattggtctgaac
atgcctgcaaagactgttgtgtttaccaatgtgcgaaaatttgatggagaccgattcaga
tggttgtcaagtggagagtacatccaaatgagtggccgtgctggtcgtcgaggtattgat
cagcgtggtatctgtatactgatggtagatgagaaaatggaaccttcaactgccaaaatg
atgctgaaaggaagtgctgatagtttgaacagtgcctttcatctgagctacaacatgctg
ttaaatcaaatgcgatctgaggatggggatccagaaaagctcctccggcattcattttat
caatttcaggctgatcgttctctccctgatcttgagaagcaaatcaaggaactggaatca
gagagaaattcgatggtcattgaggaagaggagagcttgaaggattattatgatctctta
cagcagcacaggagtttaaagaaggatgtccatgatattgtcctctctccaaaacatgtt
ctgcctttcttgcaacctggaaggcttgtccgcattgaatatagtacagatgagccagcc
aacttttccattgatgaaaatgtcacatggggaattataataaactttgaaaaagtgaaa
tcccatggtgaagataggagacctgaggattctgattacacggttgatgtccttaccaga
tgttctgtaactaaggacaacaatggtaagaaaacaatgaaggttgttcctctgaaagcg
cgtggagaaccagttgtagtttcattgccactttcacagattgatggactaagcagcata
cggatgtacatacctaaggatcttttgcctgtagaagctcgagaaaacaccttgaggaaa
gttgaagaagtcctttcaaggtttgctaaagatggggtgcctctattggatccagaagaa
gatatgaaagtacaatcgaaatcatttcggaaagctaccagacgaatagaagctctggag
agcttgtttgagaagcacgatatccgtaactctccacatatccagcaaaagctgaaagtc
tttcatgctaagcaagaactatcagccaaaataaagtccataaagaaaacaatgcgatct
tccactgctttagctttcaaggatgaactcaaggcccggaaacgtgttcttcgcaggctg
ggatatgttacgagtgatgatgttgtggaagtgaagggcaaagtggcctgtgagataagt
tcagctgatgagcttacattgacggagcttatgtttagtggtgctctgaaggatgctaca
gtagagcagatggtggcactgctttcttgctttgtttggcaggagaagctccaggatgcc
ccaaagccaagagaggagcttgatttgctcttctaccagctgcaggagacagcaagaagg
gttgctaaccttcagcttgaatgcaagatccaaattgatgtggaaagttttgtgaattct
ttccgacctgacataatggaagcggtgtattcatgggccagagggtcgaagttctaccaa
atcatggagatgacccaagtgtttgaaggaagcttgatcagggccatcaggaggctggag
gaggttctgcagcagctgattctggcatccaagtctattggggaaaccgagttagaagca
aaactcgaggaggcagtcaacaagatcaagagggacatagtgtttgcagcatctttgtac
ttgtaa
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