Sorghum bicolor (sorghum): 8067888
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Entry
8067888 CDS
T01086
Name
(RefSeq) protein transport protein SEC16A homolog isoform X1
KO
K20353
COPII coat assembly protein SEC16
Organism
sbi
Sorghum bicolor (sorghum)
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sbi04131
]
8067888
Membrane trafficking [BR:
sbi04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
8067888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
Motif
Other DBs
NCBI-GeneID:
8067888
NCBI-ProteinID:
XP_021304254
LinkDB
All DBs
Position
10:complement(362499..371328)
Genome browser
AA seq
1891 aa
AA seq
DB search
MASDFDETDEAFFDKLVNSDDDDDDPPVATAAASASARGLAALSLTDQPDAAPPPRDQPA
VAAPPTEEPERGPSPEVDPAAVLQHPETQARAAEPVPDLAATAGADPSGDLLPEDGEALF
GAAAVPGDHQGLQASPLLSLPAGTGDVSAPDRTVSQHTDSNASSQLDSSTAAEGSGDQSA
NVQLESTDPRYLESLYPGWKYDDATQQWYQVDTLSAQSYAAQNTGAAVAGHGSDVHLQQQ
QRQLGASYMQNTSHSETVLEPTQPTSQPETEADNQPAVAPLKEEEADCEPVQMHHVAHTG
VGYGENNASSQFQTTSNASSQFDSSITAEGYGDQSANAQLEYNDPRYLESLYPGWKYDEA
TQQWYPLDTLNTQTYAAHDTGGAVTDLASGSVQQQQQSSGSYLENTSHAEPVLEPTEPTS
EPKPQLEPVVAPPGTEVDNQPTVAPQKEERVEHEPMLVYTKPEAEEIPAYAGDTATAKEG
VSPGSEKGIHTAIKQVQWNDFGASTGGGGADLFGDLLPDGAGDDFFGGTVPGNQGVQSSL
VGAKNVSAPDHSFSTGLDNSAMISAGHNFSGGVNKNANTHFSSSGSSAGYGDQSTNAQLN
STDPKYLESLYPGWKYDEATQQWYQVGTHSAQSYIADNTGAVVALGTDNTQQNQQQFSAS
YLQSNLHAVLETIAEESSTNATSWPQGGTNPGPAEYPSNMLFYAEYPGWYFDTNTQQWQT
LESYQQSVAQVATTVAASDVFAGAGHSVAHYTEDSYASSYNQQSQWQPNSLGNTMQPDVS
GGKSLLGSSYSSNQQAGNQIGQQANAESLQSSINHEPNHIETFMPSTGQYTGSEGNQASY
KGFEPFTGNQSWYRGLEHSTSKELRYKGFEPSTGFQNSRKEFQPPKDHQDGHMADEPLIR
DGYVSSNGVANTQNFVPKESIYKTQMHDDSTAHTHLASNYWGTQTSSGIAQQQLIGTNDP
SQHFGFSPHEQRSSAGRPPHTVVSFGFGGKLVVLKETSSMAADFDSGNQGNSGRTISVLN
IPEVVADKIDHSSITNSGAFSYFHALCRHPIPGPLVGGSAASKDVNKWLDDMTGVYESSQ
TEFQGGDVQKVLISLLKILCQHYGKLRSPFGSDPSQEGIDGPEMAVTKLFSSCKSSANMK
GYGAVVHCMRNLPSESQIQTTAQEVQNLLVSGRRKEALQHAQEGQLWGPALILALQLGHK
FYADTVKKMAHCHFVSGSPLRTLCLLIAGQPADVFNFENPVNSGSLCSPHQPVEAAPKGM
LDDWQENLAIITANRTKGDDLVITHLGDCLWKEKNEVASAHSCYLVAELNIDSYSESARM
CLIGADHLRCPRTFTSPEAIQRTEVYEYAKVLGNSQYIHLSFQPYKLIYAYMLAEVGKIS
DSLKYCQASLKVLKSSGRAPELEAWKQLFMTLEDRIRTHQQGGYATNLAPGKIVGKLFTS
LDKSLSRMMGTQAAPLPQLPQGVANERDVYSPPDTKVVNSQSVMSMTPLVSSASEQSMSE
IGGNSGYGREVAHNRSISEPDFGKSPQHQGVVSSKAQSTSGSGSSRFGWLVEKTMGLVSK
SHRQAKLGEQNKFYYDEKLKRWVEEGAEIPAEEPPLPPPPSKVPFQSSVPYPNSNAPPTG
GGYSSNPPEPSSGMPPMPPTQNQFSARGRIGVRSRYVDTFNKGGGGVNAFGAATSYSKPA
APSINPMSGAKFFVPTPATVASELMAEPGAHSETTRQDEPSSSPAMETAFSSPPALIPMQ
STIQRYPSGDNIQRYPSGDNIPQHPSSDSIQRYPSGDNIPQHPSSDSIQWYPSGDNIPRH
SSSDNIQRYPSMDNIVSPSGSVNSSMSRSRASSWSGTLPEQLSSTAATRSPDGQIMQSPS
MPGKRPPHSRSSSTSSAQFNGLGEELHEVEL
NT seq
5676 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggattttgacgagaccgacgaagccttcttcgacaagctagtcaactccgac
gacgacgacgacgatcccccggtcgccaccgccgccgcctccgcctccgcgaggggcctc
gccgcgctatcgctgaccgaccaacccgacgcggcgccgccgcctcgtgaccagcctgcg
gtggcggcgccaccgacggaggagccggagcgtggcccctcgccggaggttgaccctgcg
gccgtgctgcagcatccggagacccaggctcgggccgcggagccggtccccgacctcgct
gcgaccgccggggcagatccgtccggggacctcctgccggaagacggagaagccttattc
ggggctgcggctgtgcccggggatcaccagggcctgcaggcgtcgccgttgctgtcgctt
ccagcaggtaccggcgatgtcagcgcgccggatcgcaccgtctctcaacatacggatagc
aatgccagttcccagttggattccagcacagctgcggaggggtctggggatcagagcgcc
aatgtgcagttggaatccaccgatcccaggtatctagagagcctctaccctggctggaag
tacgacgacgccacgcagcagtggtaccaggtagatactcttagcgcgcagagctatgct
gctcagaatactggtgcggctgtggcaggccatgggagtgatgttcatcttcagcagcag
cagcggcagcttggtgcttcgtacatgcaaaacacttcacattcagagactgtgcttgaa
cctacgcagccgacttctcagcctgagactgaggctgacaatcagcctgctgtggcgcca
ctgaaagaggaggaggcagattgtgaacccgtgcagatgcatcatgtggctcatacaggg
gtgggatatggggagaacaatgccagttctcagttccaaacaacgagcaatgccagctcc
cagtttgattccagcataactgctgagggatacggggaccagagcgccaatgcgcagttg
gaatacaatgatcccagatatctagagagcctctaccctggctggaagtacgacgaggcc
acacagcagtggtatccgttagatactctcaacacacagacttatgctgctcatgatact
ggtggtgcagtgacagaccttgcgagtggtagtgttcagcagcaacaacagtctagtggt
tcgtacctagaaaacacttcacatgcagagcctgtgcttgaacctacagagccgacctct
gagccgaagcctcagcttgagcctgtggtagcccctcctgggactgaggttgataatcag
cctacagtggccccacagaaagaggagcgggtggagcatgaacccatgctggtgtataca
aagccggaagctgaggagattcctgcttatgctggtgacactgccacagcgaaagagggt
gtgtccccagggtcagagaaaggtatccataccgccatcaagcaggtgcagtggaatgac
tttggtgccagcactggtggtggtggggcagatctgtttggggacctcctgcccgatgga
gctggggatgacttctttgggggcactgtccctggcaaccaaggtgtccagtcatccttg
gtaggtgctaaaaatgttagtgcaccagatcacagcttctctacaggactggataacagt
gccatgattagtgctggacacaacttctctggcggagtcaataaaaatgccaacactcat
ttcagttccagtggaagtagtgcagggtatggggatcagagcactaatgcacaattgaac
tccactgatcccaaatacctggagagcctctacccagggtggaagtacgatgaggcgaca
cagcagtggtatcaggtaggtacccacagtgcacagagttacattgctgataatactggt
gctgttgtagcccttgggactgacaatacccagcaaaatcagcagcagtttagtgcatcg
tacttgcaaagcaatttacatgcagtacttgagaccattgcggaggagagcagcaccaat
gccacgagctggccccagggtgggaccaacccagggcctgcagaatacccatcgaacatg
ctgttctatgcagaatacccaggatggtactttgacaccaacactcaacaatggcaaaca
cttgagtcataccagcaaagtgttgcacaggttgcaactactgtagcagcctcagatgtg
ttcgcaggggcaggccatagtgtagctcattacactgaggattcttatgcaagtagctat
aaccagcagagccagtggcagccaaattcgttgggtaacaccatgcagcctgatgtttcg
gggggtaagagcttgttaggtagttcctatagttccaatcagcaggctgggaatcagatt
gggcagcaagccaatgctgagtctttgcaatcgtctataaatcacgagcctaatcatata
gagacattcatgccttctacaggtcaatacactggtagtgagggaaatcaggctagctat
aaggggttcgaaccttttacagggaaccagagttggtacaggggtttggagcattctaca
agtaaggagttaaggtacaaagggtttgaaccttcaacaggtttccagaatagtcgcaag
gaattccagcctcctaaagatcaccaggatggccacatggcagacgaacctttgataaga
gatgggtatgttagttcaaatggggttgccaatacacaaaattttgtaccaaaagaaagc
atatacaagacacaaatgcatgatgattccactgcacatactcatttggcaagtaactat
tggggtactcagacctcatcgggcattgctcaacagcaactgattggtacaaatgatcca
tcccaacattttggtttctcaccacacgagcagagatcatcagctggacgcccaccacac
actgtggtatcctttggatttggggggaagcttgtagttcttaaagaaaccagctccatg
gctgcagactttgacagcggaaatcagggcaattctggtcgaacaatatcagttcttaat
attccagaggttgttgctgataaaattgaccactcaagcatcactaacagtggtgcattt
agctacttccatgctttgtgtcgccatcctattcctggccctcttgttggtggaagtgct
gcatcaaaggatgtgaacaaatggcttgatgatatgactggagtatatgaatcttctcag
acggaattccagggaggggatgttcagaaggtgcttatttcattgttgaaaatattgtgt
caacactatggaaagcttcgttcaccctttgggtctgacccatcacaagagggtatagat
ggcccagagatggcagtgacgaaacttttttcatcttgcaagagcagtgctaatatgaaa
gggtatggagctgttgtccattgcatgagaaatcttccctcagaaagccagattcagact
actgcccaggaggttcaaaatcttctggtttctggtagaaggaaagaggcccttcagcat
gcacaggaaggtcagctttggggccctgcactgatccttgctttacaacttggtcataag
ttttatgcggatactgtgaagaaaatggctcactgccattttgtttccggatcacccttg
aggacattgtgccttcttattgctggacaacctgcagatgttttcaattttgagaatcct
gttaacagtggttctttgtgttctccccaccagcctgtagaggctgctcctaagggtatg
ctggatgactggcaagagaatttggcaattataacagcaaacaggacaaaaggtgatgac
cttgtaattacccaccttggggattgcctctggaaagagaaaaatgaggttgcatctgct
cactcatgctatttagttgctgaactaaatattgattcgtactctgaaagtgcaaggatg
tgccttattggtgcagatcacttgagatgtccgcgcacatttaccagccctgaagcaatc
cagagaacagaggtttatgagtatgcaaaggttcttggcaattctcagtatattcacttg
tcatttcaaccatacaagctgatatatgcatatatgcttgcggaggttgggaagatttct
gattcactaaagtattgtcaagcatctctaaaggtgctgaagtcctctggtcgtgcacct
gaactagaagcatggaagcaattgtttatgaccctggaggaccggatacgtacccatcaa
cagggtggatatgcaacaaatcttgccccaggaaagattgttggaaagcttttcacatca
cttgataaatctttgtcccgcatgatgggtacacaagctgcaccgttgcctcaactgccg
cagggtgttgcaaatgagagagatgtttattctcctcctgatacaaaagttgtaaatagt
cagtcagtgatgtccatgacacctttagtgtcctctgcttcggagcagtctatgagtgaa
attggaggaaatagtggctatggcagggaagttgcgcataacagaagtatttctgagcca
gactttggcaaaagcccccaacatcagggtgttgtatcaagtaaggcacaaagcacatca
ggttcaggcagttcacgctttggatggttggtggagaagacaatggggcttgtttcgaaa
tctcaccgccaggcaaagctaggggaacagaacaagttctactatgacgagaagctgaag
cggtgggtggaagaaggcgctgagatacctgctgaggagcctccacttcccccacctccg
tcaaaagtgccattccagagcagtgttccatatcccaactcgaatgctcctcccactggt
ggaggttattcctcaaatcccccggagcctagttccgggatgccacccatgcctcccacc
cagaaccagttctcagcgcgtggaaggattggtgttagatcaagatatgtggatactttt
aacaaaggtggtggtggtgtaaatgcctttggagcagcaacatcatatagcaaaccagca
gctccatctataaatccaatgtctggtgcaaagttctttgtgccaactccagctactgtt
gcttcagaactgatggctgagccaggtgcccacagtgaaaccacgcgacaggatgaacca
tcttcctcaccagcgatggagacagcattcagttcgccgccagcactgataccgatgcag
tcaaccattcagcggtacccaagtggtgacaacattcagcggtacccaagcggtgacaac
attccacagcacccaagcagtgacagcattcagcggtacccaagcggtgacaacattcca
cagcacccaagcagtgacagcattcagtggtacccaagcggtgacaacattccacggcac
tcaagtagtgacaacattcagcggtacccaagtatggacaacattgtgtctccctcaggt
agcgttaacagctcaatgtcaaggtcaagagcgtcgtcatggagcggaacattaccagag
cagttgagcagcactgctgctaccaggtcacctgatggacagatcatgcagtcaccatcg
atgcctggaaaaaggcctccgcacagccgttccagcagcacttcttctgcccagttcaat
ggtttgggtgaagaacttcacgaggtggagctctga
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integrated database retrieval system
