Sorghum bicolor (sorghum): 8068155
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Entry
8068155 CDS
T01086
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
8068155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sbi04121
]
8068155
Enzymes [BR:
sbi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
8068155
Ubiquitin system [BR:
sbi04121
]
Ubiquitin ligases (E3)
HECT type E3
8068155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Dsc3_N
Motif
Other DBs
NCBI-GeneID:
8068155
NCBI-ProteinID:
XP_002439197
UniProt:
C5YZ27
LinkDB
All DBs
Position
9:2242678..2250212
Genome browser
AA seq
1365 aa
AA seq
DB search
MDAGDDDAVLQYAVAAIADESAGAGELAAGLAALCDVLAVSGPDFILAIPHAGLAARLPA
LLAGGSGSGSGSGACGSSDVPLLAARAIAEACEAAPQWAPRFARHGAVDALRDRLLAVDC
IELAEECLRALDAISLECPDECLRRGVAAAVLQFFDFFSTNKQKVALQIVWNVFTDYDEV
NAAKAMEAVPALCNLLQYSDRMILESTISCLALAAAGASGTKHMSKLCESNVVQVTMTLM
VDEGWKSLNDATLTGILGLLKGLASVSAKAVKSLFELNFCELLEQMITYYSYLHHDSHKV
QILVELIYQLMPPLKTSDQHAKLVTAKRKLIMRQSRYMNQLASIVALIVQVAKSAALSSI
CHSCVVLIGKIVQLITPNFLVELQRTVNLSSFLNCLLARKNHHILFETLKISRTLLEKDQ
LFSLETFTKEGVKHAIEYIVSQSKNTSHQSERNNSMKESCLCFDLESSSTVEACSIENDA
VMELAEEIKKNFFSVKRSKKTSHRFGFTLRSVRDFFARLNVYALTHPAENPDSCKQLSDL
SRRLLSDELPVTSTFEFVQSGSIKCFAVYLSNGAYCNADLNDGPVLEQLSKVQSRLQQFA
NLALTLSNKSSANPLGILVEKLLDTLHMCYDSFPVMLSDEQISRESMMIPLRYPEAQEPT
LLELKFRRSRKERELRNYNGVLSVDLFSTPDTTEPILFPRVFRRTDQEAASKNSNQEIEA
NGSKKLVESKNDDGNRSSRLRFLYNGVTLQPSVTFFESILRLMNKGQSDLLIDPSFWEKE
HNITYRKRKKSKEISSQSSYYTRLSHVQENLQRAWLKDPFFTAILHGKLPGDLDVSDLSY
NLLFMLKVLEGLNRFSYQLLMDEQINKFAEGTLQDLNDLEVSIYPVPRHHFISSLLVNKL
EVQMQDTFFEDGLIPSWCVYLVETCPFLLSFDTRWKYFCLTVHRSFIPDQVNSSPEQVHN
TLNQVNGHLDQVKSPPQSKKYRVARSAILEGAVSVMTSHGSSSRIIDVEFEGEVGTGRGP
TFEFYTTVTHELQRGGLGMWRGDSGEHGFIHAPFGLFPKPWSPSGTSSQGVDFTNMLQKF
KLLGNLVARAVLDGRILDIPLSKAFYKVMLEQELDIYDIPLFDPELGKIVIEFQALVSRK
NFLETSSRASNPMVDLTYKNVKLEDLCLDFTLPGNPEYELVPGGSEKPVTLESLGEYVSL
VADATLKSGIAKQIEAFKSGINEVFALKALKMFTEEEMECILCGEQDAWALKNLEDHMEF
EHGYDMSSQPIIIFLEILREFGREEQRAFIQFSTGAPQLPLGGLASLEPKLTVVRKQCDG
NVDDELPSVNTCRHFIKLPPYSSKEIMRTKLKYAITEGLGSFHLS
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggcgacgacgacgcggtgctgcagtacgcggtggcggcgatcgccgacgag
tccgcgggcgcgggggagttggcggcggggctggccgcgctctgcgacgtgctcgccgtg
tcggggccggacttcatcctcgccatcccgcacgcgggcctcgccgcgcgcctccccgcc
ctcctcgccggcggctccggctccggctcagggtccggcgcctgcggcagcagcgacgtg
ccgctgctcgccgcgcgcgccatcgccgaggcctgcgaggccgcgccacagtgggccccg
cgattcgcgcgacacggcgccgtcgacgcgctccgcgacaggctcctcgccgtcgactgc
atcgaactcgccgaggagtgcttgcgagctctggacgccatatctttggaatgtccagac
gagtgcctcagaaggggggtggcagctgctgtgctgcagttcttcgacttcttttcgacg
aacaagcagaaagtggcgctccagatcgtctggaatgtcttcaccgattatgatgaagtg
aatgctgctaaggccatggaggctgtgcctgcactgtgcaaccttctgcagtattctgat
aggatgattctcgaatccactatttcgtgcttggcattggctgctgctggtgcttccgga
actaaacacatgagtaagctctgtgaatcgaatgtggtccaggtgacaatgactttgatg
gttgatgaggggtggaagagcctcaatgatgccactttaactggcattctggggctgctt
aaaggtcttgcttctgtctccgcaaaggctgtgaagtctctttttgagttaaatttttgt
gaattgcttgaacagatgataacttattacagctatttgcaccacgatagtcataaggtc
cagatacttgtggagctcatttaccagcttatgccacctcttaaaacctctgatcaacat
gctaaactagtcactgcaaagaggaaactcattatgagacaaagtcgatacatgaaccag
cttgctagcatcgtcgcccttatagtacaggttgcaaaatctgctgcactatcatcaatt
tgccacagctgtgttgttctcattggcaagattgttcaattaatcacacctaatttccta
gtggagttacagaggactgtaaatctctcaagctttcttaattgtttgttggcccggaaa
aaccaccacatcttatttgaaacactcaagatttcaaggacccttttggaaaaagaccag
ctcttttccttggagacctttaccaaggagggtgtaaagcatgcaattgagtatatagta
tcacaatcaaaaaacaccagtcaccagtcagaaagaaacaacagcatgaaagaaagttgc
ctttgctttgacctggaatcttcctcgactgttgaggcatgcagcattgagaatgatgct
gtcatggagctagcagaagagataaagaaaaacttcttctcggtaaaacggagcaaaaaa
acttcacataggtttggatttactctcagaagtgtcagggacttttttgctaggttgaat
gtatatgccttgacacaccctgctgaaaatcctgatagctgcaagcagttgtctgatctt
tcaaggagattattgtcagatgaactgccagttacttccacttttgagtttgtgcagagt
ggatctatcaaatgttttgcagtttatctctcaaatggggcgtactgcaatgcagacctc
aatgatggacctgtacttgagcagcttagtaaggtgcagagtcggctgcagcaatttgct
aatttggctctcaccctctccaataaaagttcagcaaatccacttgggattttggtggag
aagctgctagacactttgcacatgtgctatgacagttttcctgtaatgctatctgatgaa
cagatttcacgtgagagcatgatgattccgctgagatatcctgaggcccaggaaccaacg
ttattggaattaaaatttcggaggtcgcggaaggagagagaattacggaactacaatggt
gttcttagtgtcgaccttttctcaaccccagataccactgagccaattctatttcctagg
gtctttagaagaactgatcaggaagctgcatccaagaattccaatcaagagatagaagca
aatgggagcaaaaaattagtagagtccaaaaatgatgatgggaacagatcctcaagactg
agattcttgtacaatggcgtgacactccaaccatctgttacatttttcgaatcgatactc
cgtctgatgaacaagggacaatctgatctcttgatcgacccatctttctgggaaaaagaa
cacaacataacctataggaaaagaaagaaaagcaaggagatctcttctcagagttcctac
tatactcggttatcccacgtgcaagaaaaccttcaacgcgcatggttaaaggaccctttt
ttcactgccatacttcatggcaaacttcctggtgatctggatgtgtctgatctgtcctac
aatctcttgttcatgctgaaagttcttgaagggctgaaccgtttttcatatcaactgttg
atggatgaacagataaacaaatttgctgaaggaactctacaagacctcaatgatctcgag
gtgtcaatatatccagttccacgacatcacttcatcagtagccttctcgtaaataagcta
gaggtgcaaatgcaagataccttctttgaggatggcctcataccctcatggtgtgtctat
ctggttgagacctgcccattcctgttgtccttcgatacacggtggaagtacttctgcctg
actgtgcatcgctcattcattccggaccaggttaacagttctccagaacaggttcacaat
actttgaaccaagttaatggtcacttggaccaggttaagagtcctccacaaagtaaaaag
tacagggtagcccgaagtgctatccttgaaggtgctgtatcagttatgaccagtcatggc
tcaagtagtagaatcattgacgtagagttcgaaggagaggttgggactgggcgaggtcca
acatttgaattctacactacagttactcatgaacttcaaaggggcgggcttggaatgtgg
agaggagacagtggtgaacatggattcattcatgctccttttggattatttccaaagccg
tggtcgccatcaggcacttcatcacaaggagttgattttactaatatgctacagaaattc
aagcttttagggaatcttgtagcgagagcagttctggatggaaggatcctggatattcca
ctttctaaagcattttacaaggtcatgcttgagcaggagctcgatatatatgacatccca
ttgtttgatcctgagctgggcaagatagtaatagagtttcaagcacttgttagtaggaag
aactttttggaaacctcttccagagcatctaaccctatggttgatttgacctataaaaac
gtaaaattggaggatttgtgtcttgacttcactcttcctggaaatcctgaatatgaactt
gttcctggaggctcagagaagccggtaacacttgaaagtttaggtgaatatgtatctttg
gttgctgatgcaacactgaagagcgggattgccaagcagatcgaggctttcaagtctgga
attaatgaggtttttgctcttaaggccctcaaaatgtttactgaggaggaaatggaatgc
atactatgtggtgaacaggatgcttgggctttaaagaacctcgaggatcacatggagttt
gagcatggctacgatatgagcagtcaaccgattattattttcctggagatattgcgagag
tttggaagagaggagcagcgggctttcatacagttcagtactggagcccctcaactcccg
cttggcggcctagcttcgcttgagcccaagctcactgtcgtacgcaagcaatgcgatggc
aatgtagacgacgaattgccaagtgtcaatacctgccggcactttatcaagctccctcct
tactcctcgaaggagataatgagaacgaagctcaaatatgccattacagagggtctaggc
tccttccacttatcatga
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