Sorghum bicolor (sorghum): 8068548
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Entry
8068548 CDS
T01086
Name
(RefSeq) splicing factor 1 isoform X2
KO
K13095
splicing factor 1
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8068548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbi03041
]
8068548
Spliceosome [BR:
sbi03041
]
Complex A
Other components
Complex A specific factors
8068548
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
KH-I_KHDC4-BBP
SF1-HH
Motif
Other DBs
NCBI-GeneID:
8068548
NCBI-ProteinID:
XP_002444905
UniProt:
C5YLX5
A0A921QJT6
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Position
7:complement(1094870..1100508)
Genome browser
AA seq
761 aa
AA seq
DB search
MATKLDHSSAEHRQAKSTAPSSLTPKISMFGAKAGFVIPKNKLAGSLVVRSTSAKNETPV
ASREDSSRHVQRKTKWAPDLALDPVVCKGRALAYQTRVEQITKKLKSGTLDTSEIDGSLS
AGNDLNYIGSDVLKENELGNVELLELERRELIGEILRLNPGYKTPENYKPVLKETKVPLP
AEAHPGHNIIGVLLGPESNTQKRLHEETGAVIRVYGTKKINGEKNEIRHQDINEAQDAYE
DLYINVSADSYDKVDAAVVLIELLLAPVSVKSTATSTTTAVPSEVTSKDAVSANVQLVQN
TTSQPDLLHYQSHNAPWLPTPQTNAPSIPSMGPVLSTLPNNSLQPQPPAGSFSMLPYTGQ
PPHMNSMPRNPFPVPGPQQSTPSNQQHPPQFRANNSSIGPSFGQPPVIVSPHMTPSSSMP
PPVRPLQIPHPSGGWPPFSPVTPQSQRPLQASPTFMAVRPPISVSPVGATPPQGPVALAP
SNMPTMYRGQHPPVPNFTGSAPFVSRPPGGPQSFPTAVPQGPSSVAFPGGASPQSPYPPT
PDQMRGPPPAFSPVGSTPGMVPPSIASSGPPAPGPASTSGSQAQMAPLRPPLPVMGDFTF
RPVVSPAPTPDFAAPSSQMGIQDRTHPGPFFPPSNQNPNQGFQRPFDGRPMNMMGQPRMH
PPPPHFHGAFSRNPSPLEFPAGFQGVWPAVQAPHMPAPSNPSNFLPSRTFQLRPPPQQDM
SGAGGNRQGGNQIYNPFAPTAAQRTETDPEYEDLMASVGVK
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atggccacaaaacttgaccattcttctgcggagcatcgccaagcaaaatccacagcgcca
tcgtctttgacccccaagatctcaatgtttggggcaaaagctggattcgttatacctaag
aacaagctagccggctcactcgtagtccggagcaccagtgctaagaatgaaacgccagtt
gcatccagggaagatagcagcagacatgttcagagaaagacaaagtgggcacctgacctt
gctttggaccccgtcgtgtgcaaaggaagggcattggcctaccagactcgagtggagcaa
attaccaagaagctgaagtctggaactttggatacgtccgaaattgatggttcattgtct
gctggaaatgatttgaattatattggttctgacgtcttgaaagagaatgagctgggaaat
gttgaactattagaacttgaaagacgagagcttattggtgaaattctccgtttaaatcca
ggatataagacgcctgagaactacaaaccagtacttaaggagacaaaagtccctcttccg
gcagaagcacatccaggacataatattattggagttcttctaggacctgaaagcaatacc
cagaagcgactacatgaagaaactggagctgtcattcgagtatatgggactaagaaaatc
aatggagaaaagaatgagattcgtcatcaagacataaatgaagcacaagatgcttatgaa
gacctatacatcaatgtatcggctgactcttatgataaagtagatgctgcagttgtgttg
attgagctgcttcttgctcctgtttccgtaaagtcaacagctacttcaacaactactgct
gttccttcagaagttacctccaaggatgcagtttcagcaaatgtgcaactggtgcagaat
accacttcacagccagatttacttcattaccaatcacacaacgctccttggctgcccaca
ccccagaccaatgctccatcaataccttctatggggcctgttttgagtacattacctaac
aattcattgcagccacaaccgcctgctggttctttcagtatgcttccatatacaggtcaa
cctcctcacatgaatagcatgccaagaaatccatttcctgttcctgggcctcagcaatca
acaccaagcaatcagcaacatccacctcaatttcgagctaataactcctcaattgggcct
tcttttggtcaaccgcctgttatagtaagcccacacatgacaccatcttcctcaatgcca
ccaccagttagacctcttcaaataccccatccatctggtggttggccacctttttctcct
gttacgccacaatctcagaggcctctgcaagcttcaccgacttttatggcagtgagacct
cctatttctgtctctcctgttggtgcaactccaccacaaggtcccgttgcattggcacca
tcaaatatgcccacaatgtaccgtggccagcatccaccagtaccaaatttcactggttca
gcaccattcgtttccaggcctcctggtggacctcagtcttttcctacagctgtgcctcaa
ggtccttcctcagtagcatttcctggtggggcatcaccgcagtcaccttaccctccaaca
cctgatcagatgagagggccacctccagctttctctccagttggatcaactcctggcatg
gtgcctccatcaattgcatcttccggcccgcctgccccaggtcctgcaagcacaagcggc
agtcaggcacaaatggcccctttgagacctccactcccagtcatgggtgattttactttt
cggcctgtcgtatcaccagcgcctactccagacttcgcagcaccaagcagtcaaatggga
atacaagacagaactcaccctggaccattcttccctcctagcaatcagaaccccaaccaa
ggtttccaaaggccttttgatggcaggcctatgaatatgatgggtcagcctcggatgcat
cctccacctccacacttccatggagccttctccaggaatccatctcctctcgagttccct
gcagggttccagggggtctggccagcagtacaagcacctcatatgccggcaccatcaaat
ccgtcaaatttcctgccttcccggacatttcagttgaggccaccgccacaacaggatatg
tctggtgcaggtggcaacaggcagggtggcaatcaaatctacaacccttttgcaccaaca
gcagctcagagaacagagacggaccctgagtatgaggatctcatggcatcagttggcgtg
aagtag
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