Sorghum bicolor (sorghum): 8068670
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Entry
8068670 CDS
T01086
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C
KO
K07466
replication factor A1
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03030
DNA replication
sbi03420
Nucleotide excision repair
sbi03430
Mismatch repair
sbi03440
Homologous recombination
sbi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
8068670
03420 Nucleotide excision repair
8068670
03430 Mismatch repair
8068670
03440 Homologous recombination
8068670
03460 Fanconi anemia pathway
8068670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sbi03000
]
8068670
03032 DNA replication proteins [BR:
sbi03032
]
8068670
03400 DNA repair and recombination proteins [BR:
sbi03400
]
8068670
Transcription factors [BR:
sbi03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
8068670
DNA replication proteins [BR:
sbi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
8068670
DNA repair and recombination proteins [BR:
sbi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
8068670
MMR (mismatch excision repair)
8068670
DSBR (double strand breaks repair)
HR (homologous recombination)
8068670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
DUF223
DUF936
Motif
Other DBs
NCBI-GeneID:
8068670
NCBI-ProteinID:
XP_002439140
UniProt:
B3VTC8
A0A921Q951
LinkDB
All DBs
Position
9:1106472..1110770
Genome browser
AA seq
933 aa
AA seq
DB search
MAAQLTTGAVAAVSEHADGNGTLQPVLQVVDVRIVPNVKSATNQERFRMLLSDGTHTMQS
MLSTSENARIRDGIIKKGSIVHLHEFTCSTIQHRRIIIIIKLDVLQTECAIIGDPKPYDV
RIQPNNEQGTNIPANSAQANTGTYSSGPGMLGSSAAPRPVQDANNVPYGSSAAPRPVQDA
NNVPYGSSAAPRPVQDANNNVPYGGSYGGYQGTVVPPVGRAVESVPNVASGVSYGTTLAH
NNTMNVGMVQSNLQQPSLDSHQNQRFAVPSMAGGSGAPGNTYGQPAQSFYQQPPPGHMNR
NPVSKNDASRLVPVAHLNPYQNTWTIKARVTAKTDLRHYNNKNGAGKVFSFDILDGQGGE
IRVTCFNAQADQFFDLIEVDKVYLISKGSVKAAQKKFNSLNHEYEIALDFRSSIEVCVDD
DSNIPRPHYNFRQISEIENLEAGTIVDLIGIVTSVGPSGTIIRKLDNSEVQKRNLQLKDM
SGRSIELTLWGKFCDAEGQQLQLQCDSGLNPVLALKGARVTEFSGKSVNTTGSTHVKVDP
DFPEAESLRRWYATEGKTAACVSLSVVSMGRTDVRKAVAQIKDEDLGRSEKPDFITVKGA
ISHLTTDNFCYPACTLEVNGKVCNKKVINNGDGTWQCDKCDKSLPNCEYRYLLQCQVQDH
TGVTYATAFQEAGIEIVGHSAYELYNIREEDPERFAEILQGVRWQQFLFKLKVYEETYND
EHRVKCNILRAEKLDPAKESSYLLGVINGLLQDDTGSPSEAQGPMAYNAGLSNTGAGRSV
PTSNSAYTTNMSGPRYGESANQFAQQANTYIGASTPVSATRNVQTCMSCGSSGHNAQNCP
AGMYKQQPAASTASSYGSSQPRNTGPRPCFKCNQIGHFADSCPLLAPAPQQQQQQYRSGG
ASSGGYGQQQYRSGGASSGGYGQQQSYLGATNY
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcagctgacgaccggcgcggtggcggcggtgtcggagcacgcggacggcaac
gggacgctgcaacccgtgctgcaggtggtggacgtgcggatagtccccaacgtcaagagc
gccaccaaccaagagcgcttccggatgctgctctccgacggcacccacaccatgcagtcc
atgctctccacctccgagaacgcgcgcatccgggacggcatcatcaagaagggctccatc
gtccacctccacgagttcacctgcagcaccatccagcaccgcaggatcattatcattatc
aaacttgatgttctgcaaactgagtgtgctataattggagaccctaaaccctatgatgtg
agaatccaacctaataatgagcagggcaccaacattccggccaattctgctcaagctaat
acaggaacatattccagcggccctggtatgctgggatcttctgctgctccaaggccagtg
caagatgctaacaatgtaccatatggatcttctgctgctccaaggccagtgcaagatgct
aacaatgtaccatacggatcttctgctgctccaaggccagtgcaagatgctaataataat
gtaccatatggtggatcctatggtggttatcagggtacggtggtccctccagttggtcgt
gcagtagaatctgttcccaatgtggcatctggtgtatcttatggtacgactttggcacat
aataatacaatgaatgtgggcatggtgcagtcaaacttgcagcagccttcactggattct
catcagaaccaaaggtttgcagttccttccatggctggtggcagtggtgctcctgggaat
acatacggccaacctgcacagtccttttatcagcaaccgcctccagggcatatgaataga
aaccctgtgtctaagaatgatgcaagtcgtcttgtcccagtggctcatttgaacccctat
caaaacacatggacaatcaaggctagggtgactgcaaaaactgatctcaggcactacaac
aacaagaatggtgctggaaaagtcttctcctttgatatccttgatggacagggtggagaa
atccgtgtaacatgcttcaatgcgcaggctgatcagttttttgacctcattgaggttgat
aaggtgtacctgatatctaaagggtcagtgaaagcagcacagaagaagtttaactctttg
aatcacgagtatgaaatagctctggatttcagatcatctatcgaagtatgtgttgatgat
gatagcaacatccctaggccgcattataatttccggcagataagcgaaattgagaacctt
gaggcaggtactattgtggacttgattggaattgttacatcagttggcccttctggcaca
ataatccgaaagcttgataactcggaagtccagaaaagaaatcttcaactaaaagacatg
tctggtcgaagcatagaacttaccttatggggaaagttctgtgatgctgaaggccagcag
ctgcagttgcagtgtgattctggtctgaatcctgttctagctttgaaaggtgctcgagtt
actgaattcagtggtaaatctgtcaacacaaccggctcaactcatgtaaaagtagaccca
gactttcctgaggctgagagtctgcggcgatggtatgcaactgaagggaagacagctgct
tgtgtttctttgtcagtggtaagtatgggcaggactgatgtccggaaagcagtggctcag
atcaaggatgaagatctgggtcgatcagagaagccagactttatcactgttaaaggtgca
atttcacatctgaccactgataatttttgttatcctgcttgcaccttggaggtgaacggt
aaggtgtgcaacaaaaaggtaataaataatggtgatggaacatggcagtgtgacaaatgc
gacaagagcttaccaaattgtgagtatagatacttgttgcagtgccaggtccaggaccac
actggggtcacctatgctactgcattccaagaggctggtattgagattgttggccacagc
gcctacgagctctacaacataagagaagaagacccagaaagatttgctgagatcttacag
ggggttcgctggcagcagtttctattcaaactgaaagtctatgaggagacctataacgat
gagcaccgtgtcaagtgcaacattttgagagcggagaagctggatccagcaaaagagagt
tcttaccttctgggggtaatcaatggcctattgcaggatgatactggctcaccttctgag
gcgcaaggccccatggcctataatgctggtcttagcaacactggcgccggacgaagcgtg
ccaacctccaacagtgcctacactaccaatatgagtggtcctaggtatggggagtcagcg
aaccagtttgcgcagcaagcaaacacgtatattggggcgtccactccagtgtcggcgaca
cggaatgtgcagacctgcatgtcttgcgggtcaagtggacacaatgcgcaaaactgccct
gcaggcatgtataagcagcaacctgcggcaagcacagcaagctcctatggctcttcgcaa
cctcgcaacactggccccagaccgtgtttcaaatgcaatcagatcgggcactttgcggac
tcttgcccacttctggcccctgctccccagcagcagcagcagcagtatcggagcggtggc
gcttcatcaggtggttatggtcagcagcagtatcggagcggcggcgcttcgtcaggtggt
tatggtcagcagcagtcctatcttggagctaccaactactga
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