Sorghum bicolor (sorghum): 8068765
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Entry
8068765 CDS
T01086
Name
(RefSeq) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi00040
Pentose and glucuronate interconversions
sbi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
8068765
Enzymes [BR:
sbi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
8068765
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
8068765
NCBI-ProteinID:
XP_002436463
UniProt:
A0A921PXS9
C5Z3W2
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All DBs
Position
10:2784113..2785949
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AA seq
465 aa
AA seq
DB search
MAVTAVVTRRPLSILFYIILAAVAATTAAAAETPTDAAIDAAYAQLVNVTANQEYWAERA
EVAHAYNRAAYESDPVGVMDRFNDGVRRAMETSTPTRSRSRSLAHKARGGPCTATNPIDQ
CWRCRGDWARNRKRLARCGMGFGHRTTGGLAGRIYVVTDPSDEPANLVVPRKGTLRYAVI
QDRPLWITFARDMVINLCRELLVTSDKTIDGRGAQVHVVGAQITLQNVRNVILHNLHIHD
AAPRGGGVIRDSKHHWGLRGESDGDGVSVMGSSDIWIDHVSMRSCADGLVDVVDGSTAVT
ISNGHFTRHDHVMLFGASDAAVKDKAMQVTVAFNHFGKGLVQRMPRCRHGFFHVVNNDYT
HWLMYAIGGSQNPTIISQGNRFRAVDDGRFKEVTKREYTPYSEYKDWVWKSQDDLFLNGA
FFNQSGGENERRFDRLDLIQAKGGQYAELLTRYAGALNCRVGKKC
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcaccgccgtcgtgacgaggagacccctgtccatcctcttctacatcatcctc
gccgccgtggctgccaccaccgccgccgccgcggagacgccgacggacgccgccatcgac
gcggcgtacgcgcagctcgtcaacgtcaccgccaaccaggagtactgggcggagcgcgcc
gaggtggcgcacgcgtacaaccgcgcggcgtacgagagcgaccccgtgggcgtgatggat
cgcttcaacgacggcgtgcgcagggccatggagacgtcgacgccgacgcggtcccggtcc
cggtccctggcgcacaaggcacggggtggcccctgcacggcgaccaacccgatcgaccag
tgctggcgttgccgcggcgactgggcgcgcaaccgcaagcggctcgccaggtgcggcatg
ggcttcggccaccggaccaccggcgggctcgccggcaggatctacgtggtgaccgacccc
agcgacgagcccgccaacctcgtcgtccccaggaaaggcacgctccggtacgccgtgatc
caggaccgcccgctgtggatcacgttcgcgcgcgacatggtgatcaacctctgcagggag
ctgctggtgaccagcgacaagaccatcgacgggcgcggcgcgcaggtgcacgtcgtgggc
gcgcagatcacgctgcagaacgtgcggaacgtgatcctccacaacctccacatccacgac
gccgccccgcgcggcggcggcgtgatcagggactcgaagcaccactggggcctccgcggg
gagagcgacggcgacggggtctccgtgatggggtccagcgacatctggatcgaccacgtg
tcgatgcggagctgcgccgacgggctggtggacgtggtggacggctccaccgccgtgacc
atctccaacggccacttcaccaggcacgaccacgtgatgctgttcggtgccagcgacgcc
gccgtcaaggacaaggcgatgcaggtcaccgtggcgttcaaccacttcggaaaggggctg
gtgcagcggatgccgcgctgccgccatggcttcttccacgtggtgaacaacgactacacg
cactggctcatgtacgccatcggcggcagccagaaccctaccatcatcagccaggggaac
cggttccgcgccgtcgacgacgggaggttcaaggaggtgaccaagagggagtacacgccg
tacagcgagtacaaggactgggtgtggaagtcgcaggacgacctgttcctcaatggggcc
ttcttcaaccagtccggcggcgagaacgagcgccggttcgacaggctcgacctcatccag
gccaagggcggacagtacgccgagttgctcacgaggtacgccggcgcgctcaactgccgc
gtcggcaagaagtgctag
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