Sorghum bicolor (sorghum): 8068998
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Entry
8068998 CDS
T01086
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
8068998
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sbi01002
]
8068998
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sbi04121
]
8068998
03036 Chromosome and associated proteins [BR:
sbi03036
]
8068998
03400 DNA repair and recombination proteins [BR:
sbi03400
]
8068998
Peptidases and inhibitors [BR:
sbi01002
]
Metallo peptidases
Family M67
8068998
Ubiquitin system [BR:
sbi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
8068998
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
8068998
BRISC complex
8068998
Chromosome and associated proteins [BR:
sbi03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
8068998
DNA repair and recombination proteins [BR:
sbi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
8068998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCC36_C
JAB
Prok-JAB
UPF0172
DUF7310
Motif
Other DBs
NCBI-GeneID:
8068998
NCBI-ProteinID:
XP_002440165
UniProt:
C5YUW2
A0A921U5Y2
LinkDB
All DBs
Position
9:56059109..56064776
Genome browser
AA seq
423 aa
AA seq
DB search
MSLSSVKIGEEVWLTCLSHALTTETEEVMGLLLGDIELSSKGATALIWGASPQMRCERKK
DRVEVNPELLAAASAQAEKMTATIKRTTRVIGWYHSHPHITVLPSHVDVRTQAMFQLLDT
GFVGLIFSCFSEDAQKVGKIQVTAFQSEGGQQHALPLAIAPVIDLDSSCSSSDNAFASHS
ASVEGMEQDTGDSRASKNNKAWRRSMDFYSHPDTSHSTSYQPRENALILYNPDNTQEASV
DPYDSDMTPSLQEALHRSTMDISGAEYRGKEVPLFVLPTRYLLKLDTTMTSYCDMQRVLF
EEEQSAYNQAMQQNICDGKIHPLTSIHHTSTYNSSLCKLMEYCLSPAVTTLQDRLKENEL
RLSMLQEEAKQLEADTQSMRNNSPRRLMNHGAGGNSSPMAQSRHPFSNQGSPRSPMGGSR
RRA
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgtcctcggtgaagatcggcgaggaggtgtggctcacatgcctctcccacgcc
ctcaccaccgagaccgaggaggtcatgggcctcctcctcggcgacatcgagctttccagc
aagggcgccacggccctgatatggggggcgtcgccgcagatgaggtgcgagcggaagaag
gaccgcgtcgaggtcaaccccgagcttctcgccgccgcatccgcgcaagccgagaaaatg
acggccaccatcaagaggactacgagggtgatcgggtggtaccactcgcacccacatatc
accgttctgccgtcccatgtagatgttcgtacccaagcaatgtttcagttgctggataca
ggctttgtgggcctgatattttcttgttttagtgaagatgctcaaaaggttggaaaaatc
caagtgactgcctttcagtcagagggtggacaacagcatgcccttcctcttgccatcgct
ccagtcattgaccttgattcatcctgtagctcatcagataatgcgtttgcttcacattct
gcatcggttgaaggcatggaacaggacacaggggattccagggcctcaaagaataacaag
gcctggagaagatctatggatttctactctcatcctgacaccagtcattccacaagttat
caacccagagaaaatgctctcattctgtacaatcctgataacacacaagaagcgtctgtt
gatccatatgattcagatatgactccaagcctccaggaggctttgcaccggtcaactatg
gacataagtggtgcagagtatagagggaaggaggttccactttttgtgctccctacaagg
tatctcctcaagctggacaccacaatgacctcttactgcgatatgcaacgagtcctcttt
gaagaggagcaatcagcatataatcaagctatgcaacaaaatatttgtgatgggaaaatt
caccctcttacatccattcaccatacatctacatacaactcctctctctgcaaactaatg
gagtattgtttgagtccagctgttactacgcttcaggatcgcctgaaggaaaatgaactt
cggctatctatgttacaagaggaggctaagcaacttgaggctgatacacaaagcatgaga
aataattctcctcgtcgcctcatgaatcatggagctggtggcaacagttcacctatggct
cagagcaggcatcctttctccaaccaagggagccctagaagcccgatgggtggcagccgg
aggagggcttga
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