KEGG   Sorghum bicolor (sorghum): 8069357
Entry
8069357           CDS       T01086                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    8069357
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sbi03041]
    8069357
Spliceosome [BR:sbi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    8069357
 Complex C
   U5 SnRNP specific factors
    8069357
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_WDHD1_1st WDR55 EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_SPT8 NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_IFT122_1st ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_WDR35_TULP_N Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_IFT140_1st eIF2A Beta-prop_DCAF12 Beta-prop_HPS5 WD_LRWD1 Beta-prop_Nup120_160 Beta-prop_RIG_1st PEP5_VPS11_N Beta-prop_IP5PC_F
Other DBs
NCBI-GeneID: 8069357
NCBI-ProteinID: XP_002438774
UniProt: A0A921Q6U9 C5Z768
LinkDB
Position
10:complement(55613534..55618565)
AA seq 343 aa
MFSAPGNNSLALVAPRPGMELANVQHPNQAPGPGGKQRTSSLEAPIMLLTGHQSAIYCMK
FNPAGTVIASGSHDKDIFLWYVHGECKNFMVLRGHKNAILDLQWTTDGTQIISASPDKTV
RVWDVETGKQVKKMAEHSSFVNSCCPARKWPPLVVSGSDDGTAKLWDLRQRGAIQTLPDK
YQITAVSFSEAADKVFTGGLDNDVKWWDLRKNEVTEYLKGHQDMITGMQLSPDGSYLLTN
AMDNELKIWDLRPYAPENRNIKTLTGHQHNFEKNLLKCSWSPDNRKVTAGSADRMVYIWD
TTSRRILYKLPGHNGSVNETAFHPTEPIIGSCGSDKQIYLGEL
NT seq 1032 nt   +upstreamnt  +downstreamnt
atgttctcggctccaggcaacaattctttggctcttgtagccccacgaccagggatggag
ctggctaatgttcaacatcccaatcaggctccagggcctggaggcaaacagcgcacatcc
agcctggaggcaccgataatgctacttacaggtcaccagagtgctatctactgcatgaag
ttcaatcctgcaggaactgtgatagcatcaggttcccatgacaaggatatcttcttatgg
tatgtccatggtgaatgtaagaacttcatggtactgagagggcacaagaatgctattctt
gaccttcagtggactactgatgggacccagatcatctctgcaagtcctgacaagactgtg
agggtctgggatgttgagactggcaaacaagttaagaagatggccgagcactcatcattt
gtcaactcatgttgcccagcacggaagtggccacctcttgtggttagtggttcagatgat
ggtacagcaaagttgtgggatttgcgccagagaggggcgatacagactcttcctgacaaa
tatcagatcacagctgttagcttctcagaggcagcagataaggtattcactggtggcctt
gacaacgacgtcaagtggtgggatcttcgcaagaatgaagtgacagaatatctcaaagga
catcaggacatgatcactgggatgcagcttagtcctgatggatcttacctcctcaccaat
gcaatggataacgagctcaagatctgggatctgcgcccttacgcaccagagaacaggaac
atcaagactcttacaggtcaccagcataactttgagaagaaccttctgaagtgtagctgg
tcgccggataaccgcaaggtcactgctgggagcgcagaccgcatggtctacatctgggac
acaacgtcaaggcgcatcctgtacaagcttcctgggcacaatggttctgtcaacgagact
gctttccatcccaccgagccgatcattggatcttgcggcagtgacaagcagatctatctt
ggggaactttaa

DBGET integrated database retrieval system