Sorghum bicolor (sorghum): 8070497
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Entry
8070497 CDS
T01086
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8070497
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8070497
03012 Translation factors [BR:
sbi03012
]
8070497
Enzymes [BR:
sbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
8070497
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
8070497
Translation factors [BR:
sbi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
8070497
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
nSTAND3
AAA_19
NACHT
T2SSE
ABC_tran
Rad17
Motif
Other DBs
NCBI-GeneID:
8070497
NCBI-ProteinID:
XP_002464500
LinkDB
All DBs
Position
1:21213037..21228725
Genome browser
AA seq
902 aa
AA seq
DB search
MDRIYLQTWLRDKGFTYSNAYNRGKTLVFSKVPLPDYRADLDDRHGSTQKEIKMSNQTEA
RVENLLSRSKWNTNNSASTSTVSMRQFLPSTSSSVVEPAAPIGKEKLSSQLRDLQNSRKT
TASARSMQSFREKLPAFSMREEFLKAVAANQVLVISGETGCGKTTQLPQFILEEEINSLR
GSDCSIICTQPRRISAISVAARVAAERGEELGEAVGYQIRLESKRSAQTRLLFCTTGVLL
RRLVQEPDLIGVSHLLVDEIHERGMNEDFLIIILRDLLPRRPDLRLVLMSATINAELFSK
YFGDAPVMHIPGFTFPVAELFLEDVLEKTRYRINSECDNVAGSSRRKRFSSVKSDPLTDV
FEDIDINKEYGNYSITTRQSLESWSAADLDLSLVESTIEYICRYEAEGAILVFLTGWDEI
SKLLDKIKGNNFLGSPNRFLVLPLHGSMPTVNQREIFDRPPANMRKIVLATNIAESSITI
DDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGFCYRLYPKIIH
DAMPQFQLPEILRTPLQELCLTIKSLQLGAVSSFLAKSLQPPDPLSVKNAIELLKTIGAL
DDTEELTSLGRHLCTLPVDPNIGKMLLMGSVFQCLDPVLTIAAALAYRNPFVLPIDRKEE
ADAVKRSFAGDSCSDHVALLKAFVAWKEAKRSGRERTFCWENFLSPMTLKMMDDMRNQFF
DILSDIGFVSKTAGVKAYNHYGNDLEMVCAVLCAGLYPNVVQCKRRGKRTVFYTKDVGKV
DIHPSSVNAFVNQFPLPFLVYSEKVKTASIYVRDSTNISDYALLLFGGSLSPSKTGEGIE
MLGGYLHFSASKRTIELIQKLRGELDKLLQKKIEEPGLDIFSQGKGVVEAAVELLHSQTF
FH
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atggacagaatatacttgcaaacatggctcagagacaagggctttacttatagtaatgca
tacaacagagggaagacacttgttttcagcaaggtacccttacctgattatcgagcagat
ctggacgataggcatgggtcaacacaaaaggagattaagatgtctaatcagacagaggca
cgagtcgaaaaccttttgtccaggtcaaagtggaacaccaacaattctgcaagcacatct
accgtctcaatgagacaatttttgcctagcacatcttcgtctgtagttgaaccagcagca
ccaattggaaaagaaaagctcagttctcagcttagggatttgcagaattcaaggaagacg
acagcaagtgctagatcaatgcaatctttcagggagaaattacctgcattcagcatgaga
gaggagtttctgaaagcagtggctgccaatcaggttctggtcatttctggcgagacaggc
tgtggtaaaacaacccagcttccgcagttcatactagaagaagaaataaatagcctccgc
ggttctgattgcagcataatttgtactcagccccgccgtatatctgccatttcagtagca
gcaagagtagctgctgagcgaggtgaagaacttggtgaggctgttggataccagattcgc
cttgaatcaaaacggtctgcacaaacacggttgctgttctgcactaccggagttttgctt
agaagactggttcaagagcctgacttaattggggtgagtcatttattagttgacgaaatt
catgaacgtggcatgaatgaagattttctcatcataatactgcgtgaccttctaccaaga
cgtccagatcttcgccttgtactgatgagtgcaactataaatgctgaactattttccaag
tactttggagatgctccagtgatgcacatcccggggttcacttttcctgttgctgaattg
tttctggaagatgttctagaaaagactcgttacaggatcaattccgaatgtgataatgtt
gcaggtagttcaaggagaaagaggttttcatcagttaagagtgatccactaactgatgtt
tttgaggacattgacattaataaggagtatggaaattacagcattacaacaaggcagtcc
cttgaatcttggtctgctgctgacctagatttgagccttgtggaaagtacaatcgagtat
atttgtcgctatgaagcagaaggtgcaatccttgtgttccttactggctgggatgaaatt
tcaaagcttctggacaagattaaagggaataatttccttggcagtcctaatagatttctt
gttcttcctttgcatggttctatgccaactgtgaatcaacgtgaaatttttgacagacca
ccagctaatatgagaaaaattgttttggcaaccaacattgcggagagtagtatcactata
gatgatgttgtctatgtgattgattgtggtaaggccaaggagacaagctatgatgccttg
aataagctcgcatgccttcttccgtcatggatatcaaaagcgtctgctcatcagaggaga
ggtcgtgcgggccgtgttcagccaggtttttgctaccggctctatccaaagatcattcat
gatgcaatgccacagtttcagttgcctgaaattctcaggactcctttgcaagaactatgc
cttaccattaaaagcttacagcttggagcagtatcctcctttttagccaagtcactgcag
ccaccagatccactttctgttaagaatgcaattgagcttcttaaaaccattggtgcactg
gatgatacggaggaactcacctctcttgggcgacatctctgtactctcccagtggaccca
aacattgggaaaatgctgcttatgggatctgtattccagtgcctggatccagtattgaca
attgctgctgctctcgcatatcgtaatccatttgtcctaccaatagatagaaaagaagaa
gctgatgctgtcaaaagatcatttgctggtgactcctgcagtgatcacgttgctcttctt
aaggcgtttgtagcatggaaggaggctaaaaggagtggtagagaacgcactttctgttgg
gaaaattttctgtcccccatgaccctgaagatgatggacgacatgcgaaatcaatttttt
gatatactatctgatattgggtttgttagcaagacagcaggagtgaaggcatataaccat
tatggtaatgatctggagatggtttgcgctgtcttatgcgctgggctttacccaaatgtt
gtgcaatgcaaaaggcgaggcaagaggactgttttctacaccaaagatgtgggaaaagtg
gacattcatccgtcatcagtcaatgcatttgtaaaccaattcccattacctttcttggtt
tatagtgagaaggtgaagactgctagcatttatgtaagggactcgacaaatatatcggac
tatgcccttctactttttggtggttcacttagtccgagcaaaactggagaaggcattgag
atgcttgggggttatcttcatttctcagcttcaaagcgtaccatagagttgattcagaaa
ttaagaggtgaattggacaaactccttcagaaaaagattgaggaacctggacttgacatc
ttttcacaaggaaagggtgtcgtggaggcagctgtagaactgttacacagtcaaactttc
ttccattag
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