Sorghum bicolor (sorghum): 8070728
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Entry
8070728 CDS
T01086
Name
(RefSeq) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi00040
Pentose and glucuronate interconversions
sbi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
8070728
Enzymes [BR:
sbi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
8070728
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GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
8070728
NCBI-ProteinID:
XP_002437815
UniProt:
A0A921Q1K7
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Position
10:complement(2789893..2791470)
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AA seq
441 aa
AA seq
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MAAVILRSRRRHHLSVLFCAVVLAAAAQASSSNNNNVTSDEVYWAERAEAARSRNRAAYV
SDPVAAMNRFNADVLRATTRRALARYSGPCMATNPIDRCWRCRSDWAADRKRLARCARGF
GHRTTGGAAGKLYVVTDPSDDEMIVPRKGTLRHAVIQDRPLWIVFARDMVIRLRQELIVT
SDKTIDGRGAQVHVVGAQVTLQSVHDVILHNLHIHDAVAHSGGMIRDSKRHTGMRTRSDG
DGISVLSSSNVWIDHVSMSRCADGLIDVVNGSTAITVSNSHFTHHDHVMLFGASNDNPQD
EVMQITVAFNHFGRGLVQRMPRCRYGFFHVVNNDYTHWIMYAIGGNKNPTIISQGNRFIA
PDDPNAKEVTKREYTAYKDYKEWVWKSQGDVMMNGAFFNESGGQNERKYDELDFIPAKHG
RYVGQLTRFAGPLKCIVGQPC
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtaatactaaggagccgccgccgccaccacctgtccgttctcttctgcgcc
gtcgtcctcgccgccgcggcgcaggcatccagtagtaataataacaacgtcacctccgac
gaggtttactgggcggagcgcgccgaggcggcccggtcccgcaaccgcgccgcctacgtg
agcgaccccgtggcggccatgaaccgcttcaacgccgacgtgctgagggcgacgacgcgg
cgcgccctggcgaggtacagcgggccgtgcatggcgaccaaccccatcgaccggtgctgg
cgctgccgctccgactgggcggcggaccggaagcgccttgcgcggtgcgcgcgcgggttc
gggcacaggaccaccggcggcgcggccggcaagctgtacgtggtgaccgacccgagcgac
gacgagatgatcgtcccgcggaagggcacgctccggcacgccgtgatccaggaccggccg
ctgtggatcgtgttcgcgcgcgacatggtgatccggctgcggcaggagctgatcgtgacc
agcgacaagaccatcgacgggcgcggcgcgcaggtgcacgtcgtgggcgcgcaggtgacg
ctgcagagcgtgcacgacgtgatcctccacaacctccacatccacgacgccgtggcgcac
tccggcggcatgatccgggactcgaagcggcacacggggatgcgcacgcggagcgacggc
gacggcatctccgtgctgtcgtccagcaacgtgtggatcgaccacgtctccatgtcgagg
tgcgccgacgggctcatcgacgtggtgaacgggtcgacggcgatcacggtgtccaacagc
cacttcacgcaccacgaccacgtgatgctgttcggcgccagcaacgacaacccgcaggac
gaggtgatgcagatcacggtggcgttcaaccacttcggcagagggctggtgcagcggatg
ccgcggtgccggtacgggttcttccacgtggtgaacaacgactacacgcactggatcatg
tacgccatcggcgggaacaagaaccccaccatcatcagccaggggaaccggttcatcgcc
cccgacgatcccaacgccaaggaggtgaccaagagggagtacacggcgtacaaggactac
aaggagtgggtgtggaagtcgcagggagacgtcatgatgaacggcgccttcttcaacgag
tccggcgggcagaacgagcgcaagtacgacgagctcgacttcatcccggccaagcacggc
cgctacgtcggccagctcacgcgcttcgccggaccactcaagtgcatcgtcggccagccg
tgctag
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