Sorghum bicolor (sorghum): 8070933
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Entry
8070933 CDS
T01086
Name
(RefSeq) vacuolar protein-sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
8070933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sbi04131
]
8070933
Membrane trafficking [BR:
sbi04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
8070933
Hops complex
8070933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS11_N
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_C
Clathrin
zf-C3H2C3
TPR_Vps41
zf-C3HC4_2
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
8070933
NCBI-ProteinID:
XP_002447663
UniProt:
C5YEB2
LinkDB
All DBs
Position
6:complement(32355016..32361157)
Genome browser
AA seq
964 aa
AA seq
DB search
MYQWRKFEFFEEKSAGRGGGGGGGGGGSAAAVPAEIAGRVTCCSGGRGRVAVGCDDGTVG
LLDRGFRLSYGFQAYASSVLFLQQLKQRNVLVTVGDDDQSSSQSSAICLKVFDLDKVQEE
GSSTTTPFCVQILRVFTDQFPQAKITSFMVLEEAPPILLIAIGLDNGFIYCIKGDIARER
ITRFKLQVEAASDGSTSLPITGLGFRVEGQAHQLFSVTLGSVTLFSLHVQPPRRQTLDQI
GCQTNAVAMSDRMDLIIGRPEAVYFYEVDGRGPCWAFDGEKKFVGWFRGYLLCIIEDQRT
QRSTLNVYDLKNRLIAHSMPVGDVSHLVCEWGYIILIMADKKILCIGEKDMESKLDMLFK
KNLYTVAINLVQSQQADPASTAEVLRKYGDHLYGKQEYDEAMSQYIHTIGHLEPSYVIQK
FLDAKRIYNLTNYLEKLHDRGLASKDHTTLLLNCYTKLKDVEKLNHFIKDEDGVGEIKFD
VETAIRVCRAAGYHEHAMFVAKKAGRHELYLKILLEDLGRYDEALQYISGLEANQAGLTV
KEYGKILVEHRPAETVEILLRLCTDVGDRTTRRGSNSMHLLMIPSPMDFVNIFVHSPQYL
MEFLENYIKTVTDSPAQTEIHNTLLELYISNDLSFPSISQENEHENHYIKETKGKETANG
YRSGIKEKTDLGKEDPKIAKNVVDRRRKGLALLKSAWTSEMKDPLYDVDLALILCNTNAF
KDGLLFLYEKLKLYKEVISCYKQAHDHQGLIACCKKLGDSSQGGDPSLWGDLLKYFGELG
EDCSKEVKEVLTYIEKEDVVPPIVVLQTLSKNPCLTLSVVKDYIARKLEQESKLIEDDRK
SIDKYQGETDLMKREIEDLKTNAKVFQLSKCSACTFTLDLPAVHFMCMHSFHLRCLGDNE
KECPECAPEYRSVMEAKQKLEQNARDHDLFFRQLRGSKDGFSVIADYFSKGIVSKTTVPP
ENGL
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgtaccagtggcgcaagttcgagttcttcgaggagaagtcagccggccgaggcggcggc
ggcggcggcgggggcgggggatcagcagccgcggtgcctgccgagatcgcgggccgcgtc
acctgctgctcgggcggccggggccgcgtcgcggtgggctgcgacgacggcaccgtgggc
ctcctcgaccgcgggttccgcctctcctatggcttccaggcctacgcctcctccgtcctc
ttcctccagcagctcaagcaaagaaatgttcttgtcacggttggagacgatgaccagtca
tcttctcagtcatcggcaatctgtctaaaggtttttgacctcgataaagtacaagaagaa
ggatcaagtacaacaactcctttttgtgttcaaattttgcgggttttcactgatcaattt
cctcaagctaagattacatcatttatggttctagaagaagcaccacccatactgttgatt
gccattggactggacaatggtttcatttattgcatcaaaggtgatattgcacgtgagcgt
attacacgtttcaagttgcaagttgaggctgcttcagatggcagcacaagtttgcctatt
actgggcttggtttccgagttgaggggcaagcacaccagctcttttccgtaactcttggc
tctgtaaccttgttcagcttgcatgttcaaccaccaaggaggcaaacacttgatcagatt
ggttgtcagaccaatgctgtagcaatgagtgaccgtatggacttaattattggtagacct
gaagctgtatatttctatgaagtcgatggtagaggcccttgctgggcatttgatggtgag
aaaaagtttgtaggttggtttcgaggatatttactctgcattattgaagatcagaggaca
cagaggagcacccttaatgtttatgatcttaagaatcggttgattgcacatagcatgcct
gtgggggatgtttcacacttggtatgtgagtggggttatattattctcattatggcggac
aaaaagattctgtgcattggagagaaagacatggaaagtaagcttgatatgttgttcaag
aaaaatctttatacggttgcaatcaatcttgtacaaagtcagcaggctgatcctgcttcc
actgctgaggtgctgcggaagtatggtgaccatctgtatgggaaacaggaatatgatgag
gctatgtcccagtatatccacactattggtcatcttgaaccatcgtatgttatacagaag
ttccttgatgcaaagcgcatctacaacctgacaaattatttagagaagttacatgatcga
gggttagcatccaaagaccacaccacccttcttttgaactgctataccaaattgaaagat
gtggagaaacttaaccatttcatcaaagatgaagatggggtaggtgagatcaagtttgat
gtggaaactgccataagagtatgccgcgcagctggatatcatgaacatgctatgtttgtg
gcaaaaaaagctgggaggcatgagttgtacttgaagattttactagaggatcttggtaga
tatgacgaggcactgcaatacatatctggcctcgaggcaaatcaagcaggtcttactgta
aaagaatatgggaaaattcttgtggaacatagacctgctgaaacagttgaaatactgtta
aggctctgtacagatgttggagatcgtacgacgagaagaggttcgaacagtatgcacttg
cttatgataccatccccaatggactttgtgaatatatttgtgcacagcccacaatatctg
atggaatttctggaaaattatatcaaaacagtgacggattcacctgcgcaaacagaaatt
cataatacccttctggagctctatatttcaaacgatttgagcttcccgtctatctctcaa
gaaaatgaacatgagaatcactatatcaaagaaacaaaaggtaaagaaactgctaatggc
tataggtcaggaataaaggaaaaaactgatcttggaaaagaagatcctaaaatagcaaag
aatgttgttgataggagacggaaagggcttgcattactcaagtctgcttggacatctgag
atgaaagatcctttgtatgatgttgatcttgctctcattctttgtaatactaatgcattc
aaagatgggttgctctttctatatgagaaattaaaactttacaaagaggttataagttgt
tacaagcaagcacatgatcatcaaggtttaattgcatgttgcaagaagctgggggactca
tctcaaggaggggatccttctctgtggggtgatctattgaagtattttggggagcttggg
gaagattgctctaaagaagttaaagaggtcttgacctacattgagaaggaggatgttgtg
cctcccatcgttgtgctgcagacactatcaaaaaacccatgcttgacactctcagtcgtc
aaagattacattgctcgcaagcttgagcaagaatcaaagctaattgaagatgatagaaaa
tccattgacaagtatcagggggagacagatttgatgaaaagggagatagaagatctcaag
acaaacgcgaaggttttccaactgagcaagtgtagtgcgtgcactttcacccttgatctg
cccgctgtccatttcatgtgcatgcactcgttccaccttcgctgccttggtgacaatgaa
aaagaatgcccagaatgcgcacctgaatatagatctgttatggaggcaaagcagaagcta
gaacaaaacgctagggaccatgatctctttttcaggcaattgaggggttcgaaggacggc
ttttctgtcattgcagactattttagcaagggcatagtgagcaagacaaccgtacctcct
gagaacgggctatag
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