Sorghum bicolor (sorghum): 8071103
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Entry
8071103 CDS
T01086
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
8071103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8071103
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
8071103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Zn_ribbon_RanBP
Pox_mRNA-cap
Motif
Other DBs
NCBI-GeneID:
8071103
NCBI-ProteinID:
XP_002448448
UniProt:
C5YF35
LinkDB
All DBs
Position
6:complement(55210951..55217413)
Genome browser
AA seq
678 aa
AA seq
DB search
MPRKVVSGPDYDDEYDDYDEYDDDDEYDENEYANNHPVKMGKESLKKSSITVPVHWTCSM
CTFSNHESMVYCEMCGVFRETFVKSAKDGLLKDAAVAVSSEPRTSAASKIDSAKTPVKTR
AADSDSDSARKHASMSYDKANSMRLPSAGSSLGAEKKKKTPVLSDAVPVERIPLLASDGF
QPKGNQSGGASSSSQSDSVIQKLSSDIGQLNVDKNNVNVTKPCLPEEYKPEKWMLADPES
GALSQLNLAIVGHVDSGKSTLSGRLLHLLGRISKKDMHKNEKESKEKGKGSFAFAWAMDE
SSEERERGVTMTVAVAYLETKKFRVVLLDSPGHKDFVPNMISGATQADAAILVIDASTGS
FEAGMDGEGGKGVGQTKEHAQLVRSFGVEQLVIAVNKMDAVAYAKERFDFIKLQLGSFLR
SCNFKDSAITWIPLSAVENQNLISAPSDARLTSWYQGFCLLDAIDSLQLPSRDVSKPLIL
PICDVIKSQSTGQLAAYGKLETGAIKNGSKVLVLPSGQEATVKTIERDSNSCTIARAGDN
VAICLQGIDGNQLIPGGVLCHPGFPVAVANHLELKVLVLDITTPILFGSQVEFHIHHVKE
AARVTKIVALLDRTGKPSKSAPRFLKSKQNALIQVTLDGAVCVQEFSKSRALGRAYLRSS
GRTIAVGVVNRIIGQDQN
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcaaggttgtatctggacccgactatgatgatgagtacgatgactatgatgag
tatgatgatgatgatgagtatgatgaaaatgaatacgccaacaatcatcctgttaagatg
gggaaagaatcattgaagaagtcctcaattacagtgccggttcattggacgtgttccatg
tgcacgttcagtaatcatgaaagcatggtgtattgtgagatgtgtggggttttccgtgag
acctttgtcaaatctgcgaaggatggtcttttaaaagatgcagccgttgcagtgtcaagt
gagcctaggacatctgctgcatcaaaaatcgattctgcaaagacgccagtgaagactcgt
gccgcagattctgatagtgattctgcgagaaagcatgctagtatgtcttacgataaagcc
aattccatgcggttaccatctgctggtagctcactaggtgctgaaaaaaagaagaaaact
cctgtactttctgatgcagtacctgtggagaggatacctctgttggcttccgatggtttt
cagccaaagggtaaccagagtggcggggctagcagttcttcacagagtgacagtgtgatc
cagaaactctcttctgacataggccagctaaatgtagacaagaacaatgtgaatgttaca
aaaccttgtttgcctgaagaatataagcctgagaagtggatgttagctgatccggagtca
ggggcgctgagccaactaaaccttgcaatagtcggtcatgttgattctggcaagtcgaca
ctatctgggagattactgcatcttttaggaaggatatcaaaaaaagatatgcacaagaat
gaaaaggaatcgaaagagaaagggaaggggtcatttgcttttgcatgggccatggatgag
agcagtgaagaaagggaacggggtgtgacaatgactgtggctgtggcttatttggagacc
aagaaattccgtgtagttttgcttgactcacctggccacaaagattttgtgccaaatatg
atatctggtgcaacacaagctgatgcagctattcttgtcattgatgcttccactggttct
tttgaagctggcatggatggtgaaggaggaaaaggtgttggccagactaaagagcatgct
cagcttgttagaagctttggtgtcgaacagcttgttattgcagtcaacaagatggatgct
gttgcatatgcaaaagaaaggtttgatttcatcaaactacaacttggtagtttcctgcgg
tcatgcaacttcaaggactcagctattacctggattcctcttagtgctgtagaaaaccaa
aacttgatcagcgctccttcagatgctcgtctgacctcctggtatcaagggttttgtctc
ttggatgctatagattccctgcagcttccttctcgggatgtttcaaagcccttgattctt
ccaatctgtgatgttataaagtctcagtcaacaggacagttggcagcttatggaaaattg
gaaactggagccattaaaaatggttctaaggtgttagttctaccttctgggcaagaggca
actgtgaaaaccattgagcgggactctaattcatgcaccatagcgagagctggtgataat
gtggcaatttgtttacagggtattgatggaaatcaactaatacctggcggggttctttgc
caccctggtttccctgtggctgtagctaaccacttggagctgaaggttctagtcttggac
atcactactcctattctttttggctctcaggtggagtttcacatacatcatgtgaaggag
gccgcaagagtaaccaaaatcgttgcattacttgacaggactggcaaaccaagtaaatca
gcacctcgatttcttaaatccaagcagaatgctcttatacaggtcacactagatggagct
gtctgtgttcaggaattctctaagagccgagctcttgggagggcatacttgaggtcgtct
gggcgcactattgctgttggcgtggttaataggataattggccaagatcagaactag
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