Sorghum bicolor (sorghum): 8071425
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Entry
8071425 CDS
T01086
Name
(RefSeq) rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
sbi
Sorghum bicolor (sorghum)
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
8071425
Enzymes [BR:
sbi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
8071425
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
RhgB_N
Motif
Other DBs
NCBI-GeneID:
8071425
NCBI-ProteinID:
XP_021321868
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Position
8:1364503..1368053
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AA seq
661 aa
AA seq
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MQVVVDNGVVQVTLSKPQGHITGVRYNGERNLLHFDGSENSGGYWDVVWNYRGSDQPRGM
IDMLDSTEFKVVVSTEDQVELSFSSTYNPSRQDSVRLNVDKRLVMLKGSSGFYCYAIMEH
TSDYPALNISEARLAFKLNTDKFNYMAISDDIQRYMPSAADRDEPRGTPLAYKEAVLLVN
PQEPQFKGEVDDKYEYSMDNKDNAVHGWITGGGGPIVGFWVITPSNEFKSGGPMKRELTS
HVGPTSLTMFLGTHYVGNDIVLSVGDGEYWKKVMGPVFIYLNSGPSRGGHVRALWDDAKA
MARAEAGKWPYSFPESPDFAKADERGSVAGRLVVQDTFTSTAADVPALTTAYVGLAAPGQ
AGSWATECKGYQFWTTADASCGGGGGFSFTIGNVRPGVYSVYAWVPGVLGDYVSASSVTV
TAGGAVVDLGELVFRPPRSGPTVWEIGVPDRTAAEFFVPDVDPRYANRLFINKDRYRQYG
LWARYAELYPDGDPVFTVGQSDASKDWFFAHVTRKVGDGDGDGDGRYAATTREIRFTLDR
VVADGTYTLRVALAAAQMSRLQVRVNGRGGGGLAAELTTPEFGGGNAIARHGIHGVEWSF
EFPIRGYMLQEGENSVSITQTRAAGEFLGVLYDYLRLEAPPGSWRDPTTAARARTRTTRR
A
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtggttgtggacaacggcgtggtgcaggtgacgctgtcgaaaccgcagggccac
atcaccggcgtccgctacaacggcgagcgcaacctcctgcacttcgacggcagcgaaaac
tcaggagggtactgggatgtggtgtggaactaccggggctccgatcagccaagaggaatg
atcgacatgttggacagtacggagttcaaggtcgtggtttcaactgaggaccaagtggag
ctctctttcagcagcacatacaatccgtcacgccaagacagtgttcgcctgaatgttgac
aagaggcttgtgatgctgaaaggcagctccggtttctactgttacgccatcatggagcac
accagcgactaccctgctctcaacatctccgaggctcgactggctttcaagctcaacact
gacaagttcaactacatggcgatttcagacgacatacagaggtacatgccgagcgcggcg
gacagggacgagccacgtggcacgccgctggcctacaaggaggccgtgctgctggtgaac
ccgcaggagccgcagttcaagggcgaggtggatgacaagtacgagtactccatggacaac
aaggacaacgccgtccatggctggatcaccggcggcggcggccccatcgtcggcttctgg
gtcatcactcccagcaacgagttcaagagcggcggacccatgaagcgggagctcacctcc
catgtcggccccacctcgctcactatgtttcttggcacgcattacgtcgggaacgacatc
gtgctcagcgtcggcgacggcgagtactggaagaaggtgatggggccggtcttcatctac
ctcaactccggccccagccgcggcggccacgtcagggcgctctgggacgacgccaaggcg
atggcgcgtgcggaggccggcaagtggccgtacagcttcccggagtcgccggacttcgcc
aaggccgacgagaggggctccgtcgcaggcaggctggtggtccaggacacgttcacgagc
accgccgccgacgttcccgccttgacgacggcgtacgtcgggctcgccgcgcccgggcag
gctggcagctgggcgacggagtgcaagggctaccagttctggacgacggcggacgcgtcc
tgcggcggcggcggcgggttcagcttcaccatcggcaacgtccggccgggggtgtacagc
gtctacgcgtgggttcccggggtgctcggagactacgtgtcggcttcctcggtgaccgtg
actgcaggcggcgccgtggtcgacctcggcgagctcgtgttccggccacccaggtcgggc
ccgacggtgtgggagatcggcgtccccgaccggaccgccgcggagttcttcgtccccgac
gtggatcccagatacgccaacaggctcttcatcaacaaggacaggtacaggcagtacggg
ctgtgggcgaggtacgccgagctgtaccctgacggcgaccccgtgttcaccgtcggccag
agcgacgcttccaaggactggttcttcgcgcacgtcaccaggaaggtcggcgacggcgac
ggcgacggcgacgggcggtacgcggcgacgacgcgggagatccggttcacgctggaccgc
gtggtggccgacggcacctacacgctgcgcgtggcgctcgcggccgcgcagatgtcgagg
ctgcaggtgcgcgtgaacgggaggggaggaggtgggttggcggcggagctgacgacgccg
gagttcggcggcgggaacgccatcgcgcggcacggcatccacggcgtggagtggagcttc
gagttcccgatcagagggtacatgctgcaggagggcgagaacagcgtcagcatcacgcag
accagggccgccggcgagttcctcggagtcttgtacgactacctccgcctcgaggcacct
cccgggtcatggcgagaccccacgacggcggcgagggcgaggacgaggacgacgcggcgt
gcgtga
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