Sorghum bicolor (sorghum): 8071678
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Entry
8071678 CDS
T01086
Name
(RefSeq) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi00040
Pentose and glucuronate interconversions
sbi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
8071678
Enzymes [BR:
sbi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
8071678
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
8071678
NCBI-ProteinID:
XP_002453531
UniProt:
C5XY12
A0A921R2V2
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All DBs
Position
4:complement(7738702..7740981)
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AA seq
445 aa
AA seq
DB search
METTTKQLRWSRPGSLLLVAAAFLASAALSTANIADFDEHWQKRKELAEASVRETYRPDP
YNVTNSFNVAVHRATSLRRTMREMPRKHKKKGPCRATNPIDKCWRCKNDWATDRFRLARC
ARGFGQATTGGLGGPIYIVTDPSDGDVVNPRPGTLRWGVIQPGPLWIIFAKSMIIQLSQE
LLVSSDKTIDGRGAQVHIANGAGITVQLARNVIIHNLHVHDVLHSMGGLMRDSPTHVGSR
TKADGDGISLFQATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGASD
SYPQDQMMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGKAPTIISQG
NRYIAPPNIAAKVITKHYAEEGEWKNWVWHTEDDLFMNGAIFEPSGGAVQRQINSNEWVK
PKPGTYVTRLTRFSGTLSCCMSKPC
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggagacgacgacgaagcagctccggtggagccggcccggctccctcctcctcgtcgcc
gccgcgttcctggcttccgccgccctgtccaccgccaacatcgccgacttcgacgagcac
tggcagaagcgcaaggagctcgccgaggcctcggtgagggagacgtacaggcccgacccc
tacaacgttaccaacagcttcaacgtcgccgtgcacagagcaaccagcctccggcgtacg
atgcgggagatgccacggaagcacaagaagaaagggccgtgccgtgcgacgaacccgatc
gacaagtgctggcgctgcaagaacgactgggcgacggaccgtttccgtctggcccggtgc
gccaggggtttcgggcaggcgaccaccggcggcctcggcggtccgatctacatcgtgacg
gatcccagcgacggcgacgtggtgaaccctcggccggggacgctccggtggggcgtgatc
cagccaggcccgctgtggatcatcttcgccaagtcgatgatcatccagctctcgcaggag
ctgctggtgagcagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcgccaac
ggcgccggcatcacggtgcagctggcccggaacgtgatcatccacaacctgcacgtccac
gacgtgctgcactccatggggggcctgatgcgcgactcgccgacgcacgtcgggtcccgg
accaaggccgacggcgacggcatctcgctgttccaggccaccaacgtgtggatcgaccac
atctccatgtccaactgcgaggacgggctcatcgacgtggtgcagagctccacggggatc
accatctccaactgccacttcaccaaccacaacgacgtgatgctgttcggcgccagcgac
tcgtacccgcaggaccagatgatgcagatcaccgtcgccttcaaccacttcggcaggggg
ctcgtgcagaggatgcccaggtgccgatggggattcttccacgtcgtcaacaacgactac
acgcactggctcatgtacgccattggcggcggcaaagctcccaccatcatcagccaggga
aaccgatacattgcaccaccaaacatcgccgccaaagtgatcaccaagcactacgcggaa
gagggggagtggaagaactgggtgtggcacacggaggacgacctgttcatgaacggagcc
atcttcgagccgtcgggaggggcggtgcagaggcagatcaacagcaacgagtgggtgaag
cccaagccagggacgtacgtgacaaggctcacgcgcttctcgggcacattgtcctgctgc
atgagcaagccgtgctga
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