Sorghum bicolor (sorghum): 8071761
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Entry
8071761 CDS
T01086
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8071761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8071761
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
8071761
mRNA degradation factors
5'-3' decay
Decapping complex
8071761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_Vps41
Beta-prop_EML_2
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
8071761
NCBI-ProteinID:
XP_002452634
UniProt:
C5XZS6
LinkDB
All DBs
Position
4:60238027..60247120
Genome browser
AA seq
1337 aa
AA seq
DB search
MASPSGNPNPNPNPPFEIGKLFRPPNPMPTPTPNTIFPGVAGGPAGPPPPSGPYSYPPVT
PPFHRGPYIHYPQDPHAMPRPVVSFPMPNPNLNPNPNANPNAAAPGPNPGARLMQLLGNS
GPTQLETAVSMPPPTSEFAQPQPLPAMPSAPPARMLSSTSSKVPRGRLLGTGERAVHDVD
SRLPGEAQPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKLGNIRVLNINTALRSL
LRGHTQRVTDMAFFAEDVHRLASASVDGRIYVWRIDEGPDEENKPQITGKIEIAIQVVGE
AEAYHPRICWHSHKQEILFVGIGNCVLRIDTTKVGRGKDFTVEEPVKCHLEKLIDGVRLV
GKHDGDVTDLSISQWMSTRLASGSKDGTVKIWDDRKQVPLSIFKPHDGQAVYSVAFLTAP
ERPNHINLITAGPLNREVKIWASTNEDGWLLPSDSETWKCTQTLELVSSLEPRVEEAFFN
QVAVLPQASLILLANAKKNAIYAVHVEYGPDPASTRLDYIADFTVAMPILSLTGTHESQP
DGEQVVQVYCVQTMAIQQYGLELSLCSPPTADSTGFGRDPAISRVYEAPLEMAGTESSTG
TSFTDSYSVSVLSKPTIDQSADVDLKPSAPPLAYSEGDGSMPLPSAPLAPKMEVPGSGPA
PGTRDIDQSAFDYTTNRNKERDALKRQDTPMPIRKDILVKDEPRDGHSDVPMLPNPRLMF
QVGGNATHLVTPSEIISGTLSSAENNDVSKSDGGKSQDVSSRSSRVAEVEPKHIDESKPD
QNVGLEAVKETQIVCENMEKTQSSLEQTVEMISERSVTTDKYSVEESQSSSDRRASDQIG
VADENVLKKFVEIPEKIDYSSASREQSSSFTKEEKVLHPQTSGQPSPPVSAFNSTESHEP
LSSTYLPASSFPEAAATQGMLQQLMGMQKDMEKQLSTVVPASIAKEGKRLETSLGRTVEK
SIKANIDAFWVRLQEENTKREKADRERMQQLVTLITNSINKDLPSNMEKSLKKEISSLGP
IVARAITPIIEKCLTSAVYDSVQKGVGDKVCNQLEKSITGKLEATLARQIQMQFHTSGKQ
ALQDALRTSFESLLVPAFEQTCKTMFEQIDGAFQKGMSEHSIAIQQQVEAAHTPLALTLK
ETINSASSITQSFSSELLDGNRKLLALVTSGNAKAHNTSALQPFNGPMGGPQEAEAPLDP
MKELSRLISERKFDEAFTMALQRSDVSIVSWLCSQVDLRALCAMTPVPLNQGVLLALLQQ
LAIDIHNETSRKVQWMTDVAMAINPSDQMIAVHVRPIFEQVYNQLAHQRTLPTTTASDGT
SIRVIMHVINSVLLSYK
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctccgagcggaaaccctaaccctaatcccaacccaccattcgagatcgggaag
ctcttcaggccaccgaaccccatgcccacccccacccccaacaccatcttccccggcgtc
gccggaggcccggctggcccgccgccgccgtccggtccctactcctaccctccggtgacc
ccgcccttccaccgcggaccctacatccactacccgcaggacccccacgccatgccccgc
cccgttgtctccttccccatgccaaacccaaacctcaaccccaacccgaacgctaacccc
aacgccgccgccccgggccccaaccccggcgcgcgcctcatgcagctactcgggaactcc
gggccgacccaactcgagaccgccgtctccatgcccccgcccacgtcggagttcgcgcag
ccgcagccgctcccagcgatgccatccgcgccgccggccaggatgctgagcagcaccagc
agcaaggtgcccaggggacggttacttggcaccggggagcgagcggtgcacgatgttgac
tcgaggctgcccggggaagcgcagccaccgcagctggaggtaacaccgattaccaagtac
acatcggatccggggctcgtgctgggcagacaaatagctgtgaaccggacgtacatcgtg
tatgggctcaagctcggtaacatccgtgtgctgaacatcaacaccgcactccgctcactt
ctccgtggccacacacagagggtgacagacatggctttctttgctgaggatgtccatcgt
ttggcaagcgcgagcgtagatgggcggatatatgtgtggaggatcgatgaaggacctgat
gaagaaaataaaccacaaattactggaaagattgaaatcgccatccaggttgtaggtgag
gctgaagcttaccatccaaggatatgttggcactcgcataagcaagagattctatttgtt
ggaattgggaactgtgtcttaagaatagacacaactaaagtgggtagaggaaaagacttc
actgtggaagaacctgttaaatgtcatcttgaaaagcttattgatggtgttcgcttagtt
ggtaagcatgatggtgatgtgactgatttgtccatatctcaatggatgagcacacgcctg
gcctctggatccaaggatggcacggttaagatctgggatgatcgcaaacaagtgccatta
tcaatttttaagccccatgatggtcaagctgtttattcagttgcttttcttacagcacct
gaacgaccaaatcatataaatctaattactgcgggtcctctgaatcgagaagttaaaatt
tgggcttctactaatgaagatggctggttattgccaagcgattctgagacttggaagtgt
actcagaccttggaacttgttagttctctggaacctagagtcgaagaggcatttttcaac
caggttgcagtgctgcctcaagcaagcctgattttgcttgcgaatgctaaaaagaacgct
atctatgccgtgcatgttgagtatggcccagatcctgcctctactcgcttagactatata
gcagatttcacagttgcaatgcctatactaagcctcactggaacacacgaaagccaacca
gatggtgaacaagttgttcaagtctattgtgttcaaactatggccattcagcaatatggt
ctagagttatcactctgttcgcctcctacagctgatagtactgggtttggaagagatcct
gctatttcccgtgtttacgaggcgcctctggaaatggcaggaacagagtcatctacagga
actagtttcacagactcttactctgtcagtgttttgagtaaaccaactattgaccagtct
gcagatgttgatctgaaaccatcagcgccaccgcttgcatactcagaaggtgatggttcc
atgcctcttccatctgcacctcttgcaccaaagatggaggttcctggatcaggaccagca
cctggaactcgtgatatagatcaatcagcctttgactatacaacaaatagaaacaaggaa
cgtgatgctttgaaaagacaagatacacccatgcccattagaaaagatatcttggtaaaa
gatgagccaagagatggtcacagtgatgttccaatgcttccaaatccccgtttgatgttt
caggttggagggaatgctacacacttggttactccatctgaaattatatcgggcactctc
tcgtctgctgaaaacaatgatgtctccaaatctgatggaggaaaaagtcaagatgtttcc
agcagaagttcccgggttgcagaagtggaaccaaagcatattgatgagagtaaaccagat
caaaatgtaggacttgaagctgtcaaggaaactcagattgtttgtgagaatatggagaaa
actcagagttccttggagcaaactgttgaaatgatcagtgagcgctcagttacaactgat
aagtacagtgtggaagaatcacagtcatcatctgatcgacgggcatcagaccagattggt
gttgctgatgaaaatgttctgaagaagtttgtggaaatccctgagaaaattgattactcc
tctgcctccagggagcaatcatcatcgtttacgaaagaggagaaagttttgcaccctcaa
acatctggtcagccatctcctcctgtgagtgctttcaattcaactgagtcacatgagcct
ttgagctccacatacctacctgccagctccttcccagaagctgctgccacacaagggatg
ctgcaacagctcatggggatgcagaaggacatggaaaaacagcttagtactgtggttcct
gcatccatcgcaaaggagggcaaaagacttgagacatcattagggcgcactgtagagaaa
tcgatcaaggctaatattgatgcgttttgggttcgtctccaggaggaaaacactaagcgt
gaaaaggctgatagagagcgaatgcagcaattggttactctcattacgaactcaataaat
aaggacttgccttctaatatggagaagtcacttaagaaagaaatttcttcacttggacct
attgttgcccgcgcaattacacctattattgagaagtgcctgacctctgctgtttatgat
tcagttcagaaaggggtgggtgacaaggtgtgcaatcagctggaaaagtctattactgga
aaacttgaagctacacttgccaggcaaatccaaatgcagttccatacatctggaaaacag
gctcttcaggatgctttgcgtactagctttgaatcattgcttgttcccgcgtttgagcaa
acatgcaagacaatgtttgagcaaatagatggtgcatttcaaaagggaatgtctgagcac
tccattgctattcagcagcaagttgaggctgcacatactccgttagcgctaactctaaaa
gaaaccatcaattctgcatcatcaatcacccagagcttttcatcagagttacttgatggc
aatcgcaagctattggcacttgttacttctgggaatgccaaggcacataataccagtgct
ctgcagccctttaatggtcctatgggtggcccccaagaggctgaggctcccttagatcca
atgaaagagctgagcagactgatatctgaacgcaagtttgacgaagcgtttacaatggct
cttcaaaggagtgatgtttccatagtatcgtggctgtgctcccaggttgatttgcgggca
ttatgtgcaatgaccccagtacctcttaaccagggggtccttctggccttgttgcagcag
ctagcaattgacattcacaatgagacatcacgaaaggttcaatggatgacagatgttgcc
atggcaataaacccgtcagaccagatgatcgcggtgcatgtgcgacctatctttgagcaa
gtctacaaccagttggcccaccagcggacgctccccaccacgaccgcatcagatggcacc
agcatccgtgtgatcatgcatgtaattaactcggttctgcttagctacaagtga
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