Sorghum bicolor (sorghum): 8071946
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Entry
8071946 CDS
T01086
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03030
DNA replication
sbi03410
Base excision repair
sbi03420
Nucleotide excision repair
sbi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
8071946
03410 Base excision repair
8071946
03420 Nucleotide excision repair
8071946
03430 Mismatch repair
8071946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbi03032
]
8071946
03400 DNA repair and recombination proteins [BR:
sbi03400
]
8071946
DNA replication proteins [BR:
sbi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
8071946
DNA repair and recombination proteins [BR:
sbi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
8071946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA_lid_RFC1
AAA
Rad17
AAA_30
AAA_22
RCF1-5-like_lid
AAA_19
RuvB_N
nSTAND3
AAA_assoc_2
PTCB-BRCT
Gp44_lid
AAA_5
BRCT_2
AAA_17
AAA_24
AAA_16
AAA_18
RsgA_GTPase
Zeta_toxin
AAA_14
AAA_2
Mg_chelatase
NTPase_1
Sigma54_activ_2
TsaE
ABC_tran
NPHP3_N
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
8071946
NCBI-ProteinID:
XP_021317173
LinkDB
All DBs
Position
5:63391809..63402025
Genome browser
AA seq
990 aa
AA seq
DB search
MVHEDAGQERGGLWSRSGEAVRGGGSGREEEARAQHSREEVGAARIGWMLPPPLLVSCDH
DPPARRKTSKYFGSKGEKESDVEMADASAGKSADKSAAKRKLQKCNNELKEDSKPLPAKK
MSKDEEDDDDDFVAPPKKKTPVKPPPSKKAKVESNAQVDDAEDEDRMDEDAKTPSKGAGR
GRGRGGRGAGAGAATGGRGRGGGGRGFMNFGERKDPPHKGEKEVPEGAPDCLSGLTFVIS
GTLDSLEREEATDLIKRYGGRVTGSISKKTSYLLADEDIGGVKSNKAKDLGVPFLTEDGL
FDLIRKSKPAKAPVDKHQSNNSSEKLQKSLTKSSPAKVEKRAEASAVGKSIASNSNAASA
SADKQKPKNVDRGSMQWTEKYRPKVPNDIVGNQSMVKQLHDWLKSWDALFLHSGQKGKGK
KQTDSAAKKAVLLSGPPGIGKTTTAKVVSQMLGLQAIEVNASDSRGKADSKIEKGVGGST
SNSIKELISNATLNYGDNRSKHPKAVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICI
CNDRYSQKLKSLVNYCLMLNFRKPTKQQMGKRLMEIAKKEGIQAQENAMEELAERVHGDI
RMALNHLQYMSLSQSVVKYDDIRERLNSSSKDEDISPFTAVDKLFGFNGGRLRMDERIDF
GMSDPDLVPLIIQENYINYRPNTIGKDESGVKRMNALARAAESIADGDLVNVQIRRYRQW
QLSQAACFASSIVPAAWMHGNREILEAGERNFNRFGGWLGKYSTTNKNRRLLEDVHSHIL
ASQQANLDREALRLDYLTLILRELTDPLKKMSKDEAVQKVVEFMDTYSLSQEDFDTIVEV
SKFKGHPSPMDGIQPAVKSALTKAYKQGSSSRVVRAADLINIPGMKKPLKKRVAAILEPV
EESLPEENGASAEDDEDDSSDTENNDELVPANSTPKLDLQSDKKKGIQVQLDLKSNGNGS
GGKKAPAARSRVTGSGGKAAAGGSAGKRKR
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggttcatgaagacgcaggacaagagcggggcggcctctggagccgcagcggcgaagcc
gtcaggggcggcggcagcggccgagaagaagaagcccgtgctcagcattcccgagaagaa
gtcggggccgcccgcattggttggatgctgcccccgccgttgttggtgtcctgtgatcat
gatcctcctgctagaaggaagacaagcaagtactttgggtcaaaaggagagaaggaatca
gatgttgaaatggcagacgcctctgccggaaagagtgctgacaagagtgcggctaaaaga
aaacttcagaaatgcaacaatgaacttaaggaggacagcaagcctttgccagcaaagaaa
atgtctaaggatgaagaagatgacgatgacgactttgtggcacctccaaagaagaaaact
ccagtgaagccaccgccttcaaaaaaggctaaagttgaatctaatgctcaagttgatgac
gctgaggatgaggacaggatggatgaagatgccaagaccccctcaaaaggagctggaaga
ggaaggggaaggggaggaagaggagcaggagcaggagctgccactgggggcagaggtaga
ggaggaggtgggagaggttttatgaattttggtgagaggaaagatcctcctcacaaagga
gaaaaggaggtcccagagggtgcccctgactgtttatctggtctgacatttgtcataagt
ggtacccttgacagtcttgaacgtgaggaagcaactgatctaattaagcgttatggtggc
cgtgtgactggctctattagtaaaaagacgagctacttactggctgacgaagacattggt
ggagttaaatctaacaaagcaaaagatctgggtgtcccattcttgactgaagatggttta
tttgatttgatccgaaaatcaaagcctgcaaaggctcctgtagacaaacatcaaagcaac
aacagttctgaaaagcttcagaaatcactgacaaagagctctccagctaaagttgaaaaa
cgagctgaggcaagtgctgtgggaaaaagtattgcttcaaatagtaatgctgcaagtgcc
tccgctgacaaacaaaagcccaagaatgttgaccgtggttctatgcaatggacagaaaaa
tatcggccaaaagttccaaatgacatagttggcaatcaatcaatggtcaaacaacttcat
gattggttgaaaagttgggatgcactattccttcattctggccaaaagggtaagggaaag
aaacaaactgacagtgcagccaaaaaggctgtgttgctgagtggacctcctggtattggt
aagactactactgctaaagttgttagtcagatgcttggactgcaggccattgaggtaaat
gcgagtgatagccgtggtaaggcagactccaagattgagaagggtgttggggggagtaca
tcaaattctatcaaagagcttatcagcaacgcgactctgaattatggtgacaatcggtca
aaacatcccaaagctgtactaatcatggatgaagttgacggtatgtctgctggagataga
ggtggtgttgctgatcttattgctagcatcaagatatccaagatccctattatctgcatt
tgtaatgaccgttatagccagaaattgaagagtcttgttaattactgcctgatgctcaac
ttcagaaaaccaacgaaacaacagatgggtaaaagattgatggaaattgccaaaaaggaa
ggtattcaagctcaagagaatgcaatggaagagcttgctgaaagagtgcacggagatatt
cgcatggcactcaaccatttgcagtatatgagcctctcccaatctgtggtcaaatacgat
gatataagggagcgacttaacagcagttcaaaggatgaagatatttctccttttactgct
gttgacaaactttttggtttcaatggtgggaggttaaggatggatgagagaattgatttt
ggcatgagcgatcctgatttagttcccttgattatccaggaaaattatatcaattatcgg
cctaacaccatcgggaaggatgaaagtggagttaaaagaatgaatgctctagcccgggct
gctgaatctatagcggacggtgatcttgttaatgtacaaataagaagatatcgacagtgg
cagttgtcgcaagctgcttgttttgcttcatctatagtacctgccgcttggatgcatggg
aacagagaaatccttgaagcgggtgagcggaattttaataggtttggtggatggttgggt
aagtactcaactactaacaaaaacagaaggctactggaagatgtccacagtcatattctt
gcctcccagcaagcaaacttggacagggaggcattgaggttggattatcttactcttatt
ttgagagagctgactgacccactgaaaaaaatgtcaaaggatgaagctgttcaaaaggtg
gtagagtttatggatacatactctttaagccaggaagacttcgacacgattgtggaagta
tccaaatttaagggtcatccaagtcctatggatgggattcaacctgctgttaaaagtgcc
ttgacaaaggcatacaaacaaggaagtagttctcgtgttgttcgagcagcagatctaata
aatattccaggcatgaaaaagccattaaagaaacgagtggctgcaatcttggagccagta
gaagagagcctgcctgaagaaaatggcgcatcagctgaagatgatgaagatgattcttct
gacactgaaaataatgatgaacttgtccctgctaactctacgccgaagctggacctgcaa
agtgacaagaagaaaggaattcaagtccagcttgacctgaagagcaatgggaatggctct
ggtgggaagaaggcgcctgccgccagatcaagagtgactgggtcaggtgggaaggccgcg
gcgggtggttcagctggtaagaggaagaggtaa
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