Sorghum bicolor (sorghum): 8071947
Help
Entry
8071947 CDS
T01086
Name
(RefSeq) prolycopene isomerase, chloroplastic
KO
K09835
prolycopene isomerase [EC:
5.2.1.13
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi00906
Carotenoid biosynthesis
sbi01100
Metabolic pathways
sbi01110
Biosynthesis of secondary metabolites
Module
sbi_M00097
beta-Carotene biosynthesis, GGAP => beta-carotene
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
8071947
Enzymes [BR:
sbi01000
]
5. Isomerases
5.2 cis-trans-Isomerases
5.2.1 cis-trans Isomerases (only sub-subclass identified to date)
5.2.1.13 prolycopene isomerase
8071947
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Amino_oxidase
NAD_binding_8
DAO
FAD_oxidored
FAD_binding_2
HI0933_like
GIDA
Pyr_redox_2
Thi4
FAD_binding_3
GMC_oxred_N
MA3
Pyr_redox_3
Motif
Other DBs
NCBI-GeneID:
8071947
NCBI-ProteinID:
XP_002449729
UniProt:
C5Y4W1
A0A921UHV4
LinkDB
All DBs
Position
5:63418324..63423117
Genome browser
AA seq
587 aa
AA seq
DB search
MPPLAARVHAPILLAPVAPHPATRLCASSGPRGGVGGFRRGALASEKPQAVAVAEKAGGE
VGGGEGEGPYDAIVIGSGIGGLVAATQLAAKGARVLVLEKYLIPGGSSGYYRRDGFTFDV
GSSVMFGFSDKGNLNLITQALEAVGRKMEVLPDPSTVHFHLPGDLSVLVHRKYEDFINEL
ISKFPHEKEGILKFYDTCWKIFNSLNSLELKSLEEPLYLFGQFFQKPLECLTLAYYLPQN
AGDIARKFIKDQELLSFIDAECFIVSTVNALQTPMINASMVLCDRHFGGINYPVGGVGGI
AISLADGLVEKGSEIRYKANVTNVILENGKAVGVRLSNGKEFFAKTVISNATRWDTFGKL
LKEKELPEEEKNFQKNYVKAPSFLSIHMGVKASVLPAGTDCHHFVLEDNWNNLEKSYGSI
FLSIPTVLDPSLAPEGHHILHVFTTAGIEDWEGLSRKEYEEKKEEVANEIIRRLEKKLFP
GLQDSIVLKEVGSPKTHRRFLARNDGTYGPMPRGKPKGLLAMPFNTTSIDGLYCVGDSCF
PGQGVIAVAFSGIMCAHRVAADIGLEQKSPVLDAGLLGLLRWFRTLA
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgctcgccgcgcgcgtccacgccccgattctcctcgcccccgtcgcacctcac
cccgccacgcgcctctgcgcatcaagcgggccccgcggcggcgtcggcgggttcaggagg
ggcgcgctggcctcggagaagccgcaggcggtggcggtcgcggagaaagccggcggcgag
gttggtggaggagagggcgagggcccgtacgacgcgattgtgatcgggtccgggatcgga
ggcctggtggcggccacgcagctcgcggccaagggcgcgcgggtgctggtcctcgagaag
tacctcatccccgggggaagctccgggtactaccgccgcgacgggttcaccttcgacgtc
ggctcctccgtcatgttcggcttctctgacaagggtaacttgaatttgatcacacaagca
ttggaagcagttgggcgtaagatggaagttctacctgacccttctacagtccatttccac
ctacctggtgatctctctgtccttgtgcatagaaagtatgaagacttcatcaacgaactg
atcagcaaattccctcacgagaaagaagggatccttaaattctacgatacgtgctggaag
atcttcaattcactaaattcgttggagctgaagtctctagaggaacctctttatcttttt
gggcaattttttcagaagcctctggaatgcttaactctagcttattatttgccacagaat
gctggggatattgctcgcaagttcattaaagatcaggagctactctccttcatagatgcc
gagtgttttattgtgagcacagtcaatgccttacaaacacccatgataaatgcaagcatg
gtcttgtgcgataggcactttggggggattaattatccagttggtggtgttggtggtatt
gcaatatccctggcagatggccttgttgaaaagggcagtgaaatccgttacaaggcgaat
gtaaccaatgttattcttgaaaatggaaaggctgttggggtgaggttatcaaatgggaag
gagttctttgctaaaacggttatatcaaatgccactagatgggacacgtttggaaaactc
ttgaaagaaaaagaacttccagaagaggagaaaaactttcaaaagaattacgttaaagca
ccatcattcctttcaattcatatgggtgtcaaagcgtcagttctgcctgctggcactgac
tgccaccattttgtacttgaggataattggaataatttggaaaagtcttatggaagcata
tttttaagtatccctacagttcttgatccatcattagctcctgaaggacatcatatactt
catgtatttactaccgcaggcatagaagactgggagggtctttctaggaaggagtatgaa
gagaaaaaagaggaggtagccaatgagattataagaaggcttgaaaagaagttgtttcct
ggtcttcaagattcaatagtcctcaaagaggtaggctcaccaaaaactcaccgaagattt
cttgctcgaaatgatggtacatatggaccaatgccacggggtaaaccgaagggcttactg
gctatgcctttcaatactacttcaatagacggcctttactgtgttggtgatagctgtttt
cccgggcaaggtgtcatagctgtagcattctcagggatcatgtgtgctcaccgagttgct
gcagatattggactagagcaaaaatctccggttctagatgctggtcttcttgggctactc
aggtggttcagaacacttgcatag
DBGET
integrated database retrieval system
