Sorghum bicolor (sorghum): 8072118
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Entry
8072118 CDS
T01086
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8072118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8072118
03012 Translation factors [BR:
sbi03012
]
8072118
Enzymes [BR:
sbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
8072118
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
8072118
Translation factors [BR:
sbi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
8072118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
R3H
Helicase_C
HA2_C
DEAD
OB_NTP_bind
HA2_N
nSTAND3
Ank_2
ATPase
Ank_5
AAA_19
AAA_22
Rad17
ResIII
AAA_23
AAA_7
AAA_25
PhoH
NPHP3_N
AAA_16
Motif
Other DBs
NCBI-GeneID:
8072118
NCBI-ProteinID:
XP_002456402
LinkDB
All DBs
Position
3:63703161..63713551
Genome browser
AA seq
1195 aa
AA seq
DB search
MGRKGRKGKGAAAGPAAGGSGGMREATLVRVSKVLEDFRASNAEVYTFEPGISRQERAAI
HQMCRKMGMLSKSSGNGEKRCLSVYKRKQKREPEMEEGPSYLGFSEEARHVLQDLFMHYP
PGDADLNGDFDRNSSDKAANIKWKTDSAFCRPVMSKLDITKKVEMLASKVNGSYQLRKIM
EDRTKLPISSFKDVITSTLENHQVVLISGQTGCGKTTQVPQYILDHMWGKGESCKIICTQ
PRRISAISVAERISAERGEAVGDTVGYKIRLESKGGQNSSVLFCTNGVLLRVLIGRGTKT
SKARNPSKARNQKRSLDDAILGITHIIVDEIHERDRFSDFMLTILRDLLPVYPHLRLVLM
SATIDAERFSQYFNGCSVIQVPGFTYPVKSFYLEDVLSILQSAGDNHLNTTSDKKESIVL
TDDFKSSMDDSINLALVNDEFDPLLELISAEQNREVCNYQHSETGVTPLIVFAAKGQLGD
VCMLLSFGVDCSAQDHDGKSALDWAQEENQQEVYEVIKKHMECSSEKSTEDNELLNKYLA
TINPEHIDTLLIERLLGKICVDSNEGAILVFLPGWEDINQTRERLFASPFFRDSSRFLVL
SLHSMIPSSEQKKVFKRPPAGVRKIILSTNIAETAVTIDDVVFVIDSGRMKEKSYDPYNN
VSTLHASWVSKASARQREGRAGRCQPGTCYHLYSRFRASSLPDYQIPEIKRMPIEELCLQ
VKLLDSNCRIADFLKKTLDPPIPETVGNAIAVLQDLGALTQDEQLTELGEKLGSLPVHPS
TTKMLLFAILMNCLDPALTLACAADYRDPFVLPIAPDERKRAAAARVELASLYGGFSDQL
AVVAAFDCWRRARDRGQESQFCAKYFVSSNIMNMLSNMRKQLQNELSQRGFVPADASACS
LNSKDPGIMRAVLMAGAYPMVGKLLPPRKNARKAVVETASGAKVRLHPHSCNFNLSFNKS
YGNPLLIYDEITRGDGGMYIKNSSVVGSYPLLLIATEMVVAPPDDDSDEEENSSEDEAEE
STLVQHKEDIMSSPDSTVSVVVDRWLRFDATALDVAQIYCLRERLASAILFKVKHPQDVL
PPALGASTYAIACILSYDGLPAMVPPNDLSANQGSGQNLAEASRFSQGRRTGYIPPSGFL
MSLLADKTHPGGASAHTQPSRAPVGRFDRSQRPFRSSGPGSSAPRSFKRQRNAAR
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atggggaggaaggggcggaaggggaagggcgcggcggccgggccagccgccggggggagc
ggcggcatgagggaggcgacgctggtgcgcgtctcaaaggtgctcgaggacttccgcgcc
tccaacgccgaggtgtacacatttgaacctggtatatccagacaagagcgagctgcaatc
catcagatgtgtaggaaaatgggcatgctatctaaaagttctgggaatggggaaaagcga
tgcctttctgtttataaaagaaaacagaagcgtgagcctgaaatggaagaaggccctagc
taccttgggttttctgaggaggcaaggcatgttttgcaggatttatttatgcattaccct
cctggtgatgctgatttaaatggggatttcgaccggaattctagtgataaggctgcaaac
atcaaatggaaaacagatagtgcgttttgcaggccagtaatgagtaaacttgatataacg
aagaaagtcgagatgcttgcctctaaagtaaatggatcctaccagttgagaaagatcatg
gaagacaggacaaaacttcctatttcatccttcaaggatgtcatcacttcaactttggaa
aatcaccaggtggttcttatttctggacaaacaggctgcggtaaaaccacccaggtgcct
caatacatcttggatcatatgtggggcaagggtgagtcatgtaagatcatatgcactcaa
ccacgtcggatatcagctatttcagttgccgagcgaatctctgctgaaagaggagaggct
gttggtgacaccgttggatataagatacgtttggagtcaaaaggagggcagaattcatca
gtcttgttctgcacaaatggtgttcttttgagagtactgataggaagaggaactaaaact
tcaaaagcacgtaatccttcaaaagcacgaaatcagaaacgctcattagatgatgcaatt
ttgggaataacacacatcattgtggatgaaatccatgaaagggataggttttctgatttc
atgctgactattctaagagacttgttgccggtgtatcctcatcttcgtctggtactcatg
agtgcaacaattgatgctgagcgtttttcgcaatatttcaatggatgttcggtcattcaa
gtccctggttttacctatcctgtcaaaagtttctatttggaggatgtgctttctattctg
cagtctgcgggtgataatcatctaaatactaccagtgataaaaaagagagcattgtttta
actgatgatttcaaaagctcaatggatgattcaattaacctggctttggtcaatgatgaa
tttgatcctctccttgagcttatttctgcagagcagaacagagaagtctgtaattaccag
cattcagagactggtgtaacacctttaattgtttttgctgcgaagggtcagcttggggat
gtctgtatgcttttatcttttggtgtggattgttcagcacaggatcatgatggaaaatct
gcattagattgggcacaagaagagaatcaacaagaggtctatgaagtaatcaagaaacat
atggagtgtagttcagaaaaatcaactgaagataacgagctgcttaataagtacttggcg
actattaatccagagcacattgatactctgctaattgaacggttgcttggaaaaatttgt
gtggattccaatgaaggagccatcttagtatttcttcctggctgggaagatatcaatcaa
acacgtgaaaggttatttgcttctccgttctttcgggattcatcaagatttcttgtgtta
tctcttcactctatgatcccgtcttcggagcagaaaaaggttttcaaacgtccaccagca
ggggttcgtaaaattattctctcaacgaatattgcagagactgctgtgacaattgatgat
gttgtgtttgtcatagatagtgggagaatgaaagagaaaagttatgatccatacaataat
gtgtccacacttcatgcttcttgggtttcaaaagccagtgcaagacaacgtgaagggcgt
gctggccgatgtcagccaggaacttgctatcatctttactcaaggtttagagcatcatcc
ttgccagactaccaaattcctgaaataaaaagaatgcccattgaggaactttgtttgcag
gtcaaactgcttgattcaaactgcagaatagcagactttctgaagaaaaccttggaccct
ccaattccagaaactgtaggaaatgctattgctgtgcttcaggatcttggtgctttaaca
caagatgaacaattaacagaattaggagaaaagctgggttccctgccagtccatccatcc
accaccaagatgctcctgtttgctatattaatgaactgcctggatccagcattgacattg
gcatgtgcagctgattatagagatccatttgtccttccaatagcgccagatgagaggaaa
agggcagctgcagcgagagttgagcttgcttcattgtatggtgggttcagcgaccaactt
gcagttgtggcggcatttgactgctggaggcgtgccagagatagaggccaagaatctcaa
ttttgtgcaaagtactttgtctcttcaaacatcatgaatatgctatcaaacatgaggaaa
caacttcagaatgaactgtcacaaagagggtttgtccctgcagatgcatctgcctgcagc
ttaaattctaaagatccaggtatcatgcgtgccgttcttatggctggtgcttacccaatg
gtagggaaattgctccctcctcgcaaaaatgctagaaaagcagttgtggaaacagcaagt
ggtgccaaagttcgtttgcacccacactcctgtaactttaacctatctttcaataaatct
tatgggaatccattgctgatatatgatgagatcactcgaggtgatggtggaatgtatata
aaaaattcttcagttgttgggtcatatcctttgcttctaatagctacagaaatggttgtt
gctccacctgatgatgatagtgatgaagaggaaaattccagtgaggatgaagctgaggaa
agcactttggtccagcacaaagaagacatcatgtcttcacctgatagcactgtttcagtt
gttgttgatcggtggctccgttttgacgcaacggctctggatgttgcacaaatatactgc
ctaagagaacgtctagcatctgctattcttttcaaagtgaaacatccgcaagatgttcta
ccgcctgcgcttggcgcctcaacatatgccatcgcatgcatcctttcatatgatggcttg
cctgctatggttccaccgaatgatctttcagcaaaccaaggttcaggccagaatttagca
gaagctagcagattctctcagggaagaagaacgggttatattccacctagtggttttctg
atgtccttattagctgataagacccatccaggaggtgcttcagcgcatactcagccatcc
agggctcctgttggtaggtttgatcgatctcagcgtcctttccgcagttctggacctggg
agttcagcaccacgttctttcaaaaggcagcgcaacgctgcacggtga
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integrated database retrieval system
