Sorghum bicolor (sorghum): 8072550
Help
Entry
8072550 CDS
T01086
Name
(RefSeq) probable mediator of RNA polymerase II transcription subunit 37c
KO
K03283
heat shock 70kDa protein 1/6/8
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03040
Spliceosome
sbi04141
Protein processing in endoplasmic reticulum
sbi04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8072550
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
8072550
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
8072550
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sbi01009
]
8072550
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbi03041
]
8072550
03009 Ribosome biogenesis [BR:
sbi03009
]
8072550
03110 Chaperones and folding catalysts [BR:
sbi03110
]
8072550
04131 Membrane trafficking [BR:
sbi04131
]
8072550
03051 Proteasome [BR:
sbi03051
]
8072550
03029 Mitochondrial biogenesis [BR:
sbi03029
]
8072550
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sbi04147
]
8072550
Protein phosphatases and associated proteins [BR:
sbi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-5
PP5-interacting proteins
8072550
Spliceosome [BR:
sbi03041
]
Complex B
Other components
Prp19 complex
8072550
Complex C
Prp19-CDC5 complex
8072550
Ribosome biogenesis [BR:
sbi03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
8072550
Chaperones and folding catalysts [BR:
sbi03110
]
Heat shock proteins
HSP70 / DNAK
8072550
Membrane trafficking [BR:
sbi04131
]
Endocytosis
Clathrin-mediated endocytosis
Other core components
8072550
Autophagy
Chaperone mediated autophagy (CMA)
Chaperones
8072550
Proteasome [BR:
sbi03051
]
Eukaryotic proteasome
Assembling factors
Other assembling factors
8072550
Mitochondrial biogenesis [BR:
sbi03029
]
Mitochondrial protein import machinery
Endoplasmic reticulum membrane and cytosol
Other ER-memrane and cytosol factors
8072550
Exosome [BR:
sbi04147
]
Exosomal proteins
Proteins found in most exosomes
8072550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HSP70
MreB_Mbl
FGGY_C
Hydantoinase_A
Radial_spoke_3
DACNG
Motif
Other DBs
NCBI-GeneID:
8072550
NCBI-ProteinID:
XP_002441219
UniProt:
A0A921QDM0
C5YZA1
LinkDB
All DBs
Position
9:complement(52032827..52036149)
Genome browser
AA seq
649 aa
AA seq
DB search
MAKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ
VAMNPTNTVFDAKRLIGRRFSDPSVQSDMKLWPFKVVAGPADKPMIVVNYKGEEKQFSAE
EISSMVLTKMKEIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPT
AAAIAYGLDKKATSSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDN
RMVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYT
TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFN
GKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIP
RNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQIT
VCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKKK
VDAKNSLENYAYNMRNTIKDDKIASKLGADDKKRIEDAIDGAISWLDSNQLAEADEFEDK
MKELESICNPIIAKMYQGAGADMGGAAGMDEDAPAGGSSGAGPKIEEVD
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagggagaggggccggcgatcgggatcgacctgggcacgacgtactcgtgcgtc
ggcgtgtggcagcacgaccgcgtcgagatcatcgccaacgaccaggggaaccgcaccacg
ccgtcgtacgtcgccttcaccgacaccgagcggctcatcggcgatgccgccaagaaccag
gtcgccatgaaccccaccaacaccgtcttcgacgcgaagcggttgattggtaggaggttc
tccgacccgtctgtgcaaagtgacatgaagctatggccattcaaggtcgtggctggccca
gctgacaagccgatgatagtggtcaactacaagggcgaggagaagcagttctccgccgag
gagatctcctccatggtgctgaccaagatgaaggagatcgccgaggcctacctcggctcc
accatcaagaacgccgtggtcacggtgcctgcctatttcaacgactcccagaggcaggcc
accaaggacgccggcgtcatctccgggctcaacgtgatgcgtatcatcaacgagcccacc
gcagctgccattgcctacgggctcgacaagaaggccaccagcagtggcgagaagaacgtg
ctcatcttcgacctcggtggcggcaccttcgatgtgtcgctcctgaccatcgaggagggc
atcttcgaggtgaaggcgaccgccggtgacacccatctgggcggggaggacttcgacaac
cgcatggtcaaccacttcgtgcaggagttcaagcgcaagcacaagaaggacatcagcggc
aacccgcgtgcgctgcggcgcctgcggacggcctgcgagcgtgccaagcgcacgctgtcg
tccacggcgcagaccaccatcgagatcgactcgctgtacgagggcatcgacttctacacc
accatcacccgcgcccggttcgaggagctcaacatggacctcttccgcaagtgcatggag
cccgtggagaagtgcctccgcgacgccaagatggacaagagcagcgtgcacgacgtcgtg
ctcgtgggcggctccacccgcatccccaaggtgcagcagctgctccaggacttcttcaac
ggcaaggagctctgcaagagcatcaaccccgacgaggccgtggcgtacggcgcggctgta
caggccgccatcctgagcggcgagggcaacgagaaggtgcaggacctgctcctgctcgac
gtcaccccgctgtccctgggcctggagacggccggcggcgtgatgaccgtgctgatccct
cgcaacaccaccataccgacgaagaaggagcaggtgttctccacctactccgacaaccag
cccggggtgctgatccaggtgtacgagggagagcgcgccaggaccaaggacaacaacctc
ctcggcaagttcgagctgtccggcatcccgccggcgccccgcggcgtgccccagatcacg
gtgtgcttcgacatcgacgccaacggcatcctgaacgtgtcggcggaggacaagacgacg
gggcagaagaacaagatcaccatcaccaacgacaaggggcggctgagcaaggaggagatc
gagaagatggtgcaggaggcggagaagtacaaggcggaggacgaggagcacaagaagaag
gtggacgccaagaactcgctggagaactacgcctacaacatgcgcaacaccatcaaggac
gacaagatcgcctccaagctgggcgcggacgacaagaagcgcatcgaggacgccatcgac
ggcgccatcagctggctcgacagcaaccagctcgcggaggcagacgaattcgaggataag
atgaaggagctggagagcatctgcaaccccatcatcgccaagatgtaccagggcgccggc
gcggacatgggcggcgccgcgggcatggacgaggacgcaccggccggcggcagcagcggt
gctggccccaagatcgaggaggtcgattaa
DBGET
integrated database retrieval system
